Pseudomonas xanthosomatis: KSS93_04265
Help
Entry
KSS93_04265 CDS
T07606
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pxa
Pseudomonas xanthosomatis
Pathway
pxa03030
DNA replication
pxa03410
Base excision repair
pxa03420
Nucleotide excision repair
pxa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KSS93_04265 (ligB)
03410 Base excision repair
KSS93_04265 (ligB)
03420 Nucleotide excision repair
KSS93_04265 (ligB)
03430 Mismatch repair
KSS93_04265 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pxa03032
]
KSS93_04265 (ligB)
03400 DNA repair and recombination proteins [BR:
pxa03400
]
KSS93_04265 (ligB)
Enzymes [BR:
pxa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KSS93_04265 (ligB)
DNA replication proteins [BR:
pxa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KSS93_04265 (ligB)
DNA repair and recombination proteins [BR:
pxa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KSS93_04265 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KSS93_04265 (ligB)
MMR (mismatch excision repair)
DNA ligase
KSS93_04265 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KSS93_04265 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH_5
HHH_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXH47144
LinkDB
All DBs
Position
complement(967895..969556)
Genome browser
AA seq
553 aa
AA seq
DB search
MPYWLVLLLFTPLAHAEACPDWPAQRAADEVAQLRQALARWDDHYHRQGIALVADELYDQ
SRQRLQHLQGCFELPGQDNPLASAGGTIAHPVAHTGVAKLADESAVGQWLKGKHGVWIQP
KVDGVAVSLVYRNGRLQQLLSRGDGTLGHDWSRHIPLLQRIPQQLPQALDAVFQGELYWR
LEDHVQATDGSRNARSIVAGLMARKQLSPAEAAGIGLLVWDWPAGPATQHERLAGLEELG
FPDSRRFSEAIDSLEQAVQWREHWYRTPLPFATDGVILRQGNRPPAARWRAQPPYWIAAW
KHPFSQALAEVREVSFRIGRTGRITPLLHLQPVQLDDRRISQVSLGSLARWQALDVRPGG
QVAVSLAGLTIPRLESVVHRSPHRTAVAAPQADDYHALSCWQASEGCQEQFLARLAWLGG
KQGLGMPGLGPGTWRSLVQSGLVSSLDDWLGLTHEHLHEVPGIGQARAEKLLHSFAQSRQ
QPFARWLRALGVPAPSGLALDSDWGSLASRNIEQWIAEPDIGPTRAGQLVAFFNHEQVQA
LALRLRNQQIEGF
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgccgtactggttagtgctactgctgttcacccccctggctcatgccgaagcctgcccc
gactggcccgcccagcgtgccgccgacgaagtcgcgcaattgcgccaggccctcgcccgc
tgggacgaccactatcaccgccagggcatcgcgctggtcgctgacgagctctatgaccag
agccgccagcgcctgcagcacctgcagggctgcttcgagctgccaggccaggacaacccg
ctggccagcgcaggcggcaccattgctcacccggtcgcgcataccggggttgccaagctt
gccgatgaaagcgccgtgggccagtggctcaagggcaaacacggggtgtggatacagccc
aaggtggatggtgtggcggtatcgctggtgtaccgcaacggccgcctgcagcaactgctc
agccgcggcgatggcaccctgggccatgactggagccggcacatcccgctgctgcaacgt
ataccgcaacagttgccgcaggccctggatgcggtgttccagggcgagctttactggcgc
ctggaagaccatgtgcaggccaccgacggcagccgcaacgcccgcagcatcgttgccggg
ttgatggcacgcaagcagttgagcccggccgaggctgcgggcatcggcctgctggtctgg
gactggcctgccgggccggcaacgcaacacgagcgcctggccgggctcgaggaactgggc
ttccccgacagccgtcgcttcagcgaggccatcgactcgctcgagcaggccgtgcaatgg
cgcgagcactggtaccgcacgccgctgcccttcgccaccgacggggtgattctgcgccag
ggcaaccgcccgccggccgcacgctggcgggcccagccaccctattggatcgccgcctgg
aagcacccgttcagccaggccctggccgaggtgcgcgaggtgagctttcgcatcgggcgc
accgggcgcatcacgccactgctgcatctgcagcctgtgcagctcgatgaccggcgcatc
agccaggtcagcctggggtcgctggcccgctggcaggcgctggacgtgcgccccgggggc
caggtggcagtgagcctggccggcctgaccatcccccgcctggaaagcgtggtacaccgc
agcccgcaccgcacggcagtggcggcgccgcaagccgacgattatcacgccctcagttgc
tggcaggccagcgaaggttgccaggagcaattcctcgcaaggttggcctggctagggggc
aaacaaggcctgggtatgccaggcctcgggcccgggacctggcgcagcctggtgcaaagc
ggcctggtcagcagcctggatgactggctggggctgacccacgagcacctgcacgaggtc
ccgggcatcggccaggcccgcgccgaaaaactgctgcacagcttcgcccaaagccgccag
caacccttcgcccgctggctgcgcgcattgggtgtaccggcgcccagcggccttgccctg
gactctgactggggcagcctggcttcgcgaaacatcgagcaatggattgccgagcccgac
atcggccccacccgggccggccaattggtggcctttttcaaccacgagcaggtccaggcc
ctggccttgcgcctgcgcaaccagcaaatcgagggtttctaa
DBGET
integrated database retrieval system
