Pseudoalteromonas xiamenensis: J5O05_15025
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Entry
J5O05_15025 CDS
T07215
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pxi
Pseudoalteromonas xiamenensis
Pathway
pxi03030
DNA replication
pxi03410
Base excision repair
pxi03420
Nucleotide excision repair
pxi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pxi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5O05_15025 (ligA)
03410 Base excision repair
J5O05_15025 (ligA)
03420 Nucleotide excision repair
J5O05_15025 (ligA)
03430 Mismatch repair
J5O05_15025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pxi03032
]
J5O05_15025 (ligA)
03400 DNA repair and recombination proteins [BR:
pxi03400
]
J5O05_15025 (ligA)
Enzymes [BR:
pxi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J5O05_15025 (ligA)
DNA replication proteins [BR:
pxi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J5O05_15025 (ligA)
DNA repair and recombination proteins [BR:
pxi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J5O05_15025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5O05_15025 (ligA)
MMR (mismatch excision repair)
DNA ligase
J5O05_15025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J5O05_15025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
RNA_ligase
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QTH71130
UniProt:
A0A975DG98
LinkDB
All DBs
Position
3118949..3120970
Genome browser
AA seq
673 aa
AA seq
DB search
MSNTVLEQIQTLRSKLEDFNYQYYVLDNPTVPDAEYDRVMKELKKLEAEHPEFLTADSPS
QKVGGQALNKFDQVTHAIPMLSLDNAFDEADFTSFNRRLKERLVISDDIAFCCEPKLDGL
AVSIIYEKGVLVQAATRGDGQVGENITENVKTIRNIPLKLRGQHIPAVLEVRGEVFMDVA
GFNRLNETAFAKGDKTFANPRNAAAGSLRQLDPKITANRPLSFYAYSMGQVEGMELDTEH
YAQLMQLKEFGLPVCPEIKLVENAKDALAYYQDILTRRAQLAYEIDGVVIKVNDKQYQSR
LGFVARAPRWAIAFKFPAQEELTTLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH
NGDEIARLGVMIGDTVTIRRAGDVIPQVTQVVLERRPGDAREIQFPDACPVCGSHVERIE
GEAVARCTGGLVCSAQRKEAIKHFASRKALNVDGLGDKIVEQLVERELIQTPADLFKLRQ
GHFETLERMDPKSAQNLVDALENAKSTTLAKFIYSLGIREVGEATAQNLATHFKTLDALQ
QASIDDFQTVPDVGIVVANHLFAFFSEPHNLRVVNELLEVGLQWPQIEEKSADALPLAGL
TYVLTGTLTQLNRNDAKARLQALGAKVAGSVSKNSDGVFAGEKAGSKLAKAQELNVPVMD
EDALIALLQKHEG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataccgttttagaacaaattcaaacactaagaagtaaattagaagattttaac
taccagtattacgtgcttgataatccaacggtgccagacgcggaatacgaccgagtaatg
aaagagctgaaaaagcttgaagctgagcatccagaatttttaaccgctgactcaccatcc
caaaaagtgggaggccaagcgttaaataaattcgatcaggtgacgcatgctattccaatg
ctttcccttgataatgcgtttgatgaagccgactttacctcgttcaatcgacgtcttaaa
gagcgtttagttatttcggatgatattgcgttttgctgcgaaccgaaattagatggactt
gctgtatccatcatttacgaaaagggtgttttggttcaagccgccacgcgcggtgacggg
caggtaggtgaaaacattacagaaaacgtaaaaaccattcgcaacattccacttaagtta
cgaggccaacacatccctgcggttcttgaagttcgcggggaagtttttatggatgtcgcg
ggctttaatcgactaaatgaaaccgcgtttgcaaaaggcgacaaaacgttcgctaaccct
cgaaatgctgctgcgggtagcctccgtcaattagaccccaaaataacggccaatagaccg
cttagcttttacgcctattcgatgggacaagtagaaggcatggaactcgataccgaacat
tatgcacaattgatgcaattaaaagagtttggtttgcccgtgtgcccagaaatcaaatta
gtggaaaatgcaaaagacgctttagcatactaccaagatattctcacgcgacgtgctcaa
ttggcttatgaaattgatggtgtcgtgattaaagtgaacgacaaacaatatcaatcaaga
ttggggtttgttgcccgagcacctcgttgggctatcgcttttaaattcccagctcaagaa
gaactcacaactttgttggatgttgaatttcaggtaggtagaactggagcaattacaccg
gttgcacgtttggaacctgtttttgtgggtggtgtaactgtatcaaacgccacgttgcac
aatggtgatgaaatcgctcgtttgggtgtcatgattggtgatacggtcaccatccgtcgt
gcaggcgatgttattccgcaagtaacgcaagttgtacttgagcgacgtccaggtgatgcg
cgagaaattcaattccctgacgcgtgtcctgtgtgtggttctcacgttgaacgcattgag
ggtgaggctgtcgctcggtgtacaggtggattagtgtgttcggcacaacgcaaagaagca
attaaacattttgcatcgcgcaaggctctgaatgtcgacggactgggtgacaaaattgtc
gaacagctggtggaacgtgaacttatacaaacgcctgctgacctatttaagctgcgtcag
ggacattttgaaacgttagagcgcatggatccaaaatcagctcagaatctcgttgacgcg
ctcgaaaacgcgaaatcaaccacacttgctaagtttatttattcgctcggtattcgtgaa
gttggcgaagcgacggcgcagaatttggctacccacttcaaaacgttggatgcgttgcaa
caggcctccattgatgattttcaaacggtgccagatgttgggatcgtggtcgcgaatcat
ctatttgccttttttagtgagccgcacaatctgagagttgtgaatgaactacttgaagtt
ggacttcagtggcctcaaatagaagagaaatcggcagatgcgttgccacttgcagggctt
acgtatgtgctaactggtacgttaactcaattgaatcggaatgatgccaaagcgcgctta
caggcgttgggtgctaaagttgctggcagcgtatctaagaatagcgatggtgtgtttgcc
ggtgaaaaagcgggctccaagcttgctaaagcgcaagagttaaatgtacctgtaatggat
gaggacgcgcttattgcgctgttgcagaaacacgaaggttaa
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integrated database retrieval system
