Pseudoalteromonas sp. Xi13: EJ103_10795
Help
Entry
EJ103_10795 CDS
T10490
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pxsi Pseudoalteromonas sp. Xi13
Pathway
pxsi03030
DNA replication
pxsi03410
Base excision repair
pxsi03420
Nucleotide excision repair
pxsi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pxsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EJ103_10795 (ligA)
03410 Base excision repair
EJ103_10795 (ligA)
03420 Nucleotide excision repair
EJ103_10795 (ligA)
03430 Mismatch repair
EJ103_10795 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pxsi03032
]
EJ103_10795 (ligA)
03400 DNA repair and recombination proteins [BR:
pxsi03400
]
EJ103_10795 (ligA)
Enzymes [BR:
pxsi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EJ103_10795 (ligA)
DNA replication proteins [BR:
pxsi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EJ103_10795 (ligA)
DNA repair and recombination proteins [BR:
pxsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EJ103_10795 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EJ103_10795 (ligA)
MMR (mismatch excision repair)
DNA ligase
EJ103_10795 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EJ103_10795 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AZN33176
LinkDB
All DBs
Position
1:complement(2397895..2399913)
Genome browser
AA seq
672 aa
AA seq
DB search
MSSSISEQINHLRSTLEQHNYNYYVLDTPSIPDAEYDRLLRELSALERENPEFLTPDSPT
QKVGGAALSKFEQVAHQVPMLSLDNAFSEEEFSAFNRRIKERLMSQDELTFCCEPKLDGL
AVSIIYRDGVLMQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPAELEVRGEVFMDSAG
FEKLNSEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGTIPEDHY
QQLAKLTDWGLPLCPETKLVEGTQAALDYYTDILTRRSELKYEIDGVVIKINQKALQERL
GFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN
GDEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIVFPASCPICDSHVEKVEG
EAVARCTGGLVCQAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELVKTPADLFILKQG
HFESLERMGPKSAKNLVDALEVAKTTTLAKFLYSLGIREVGEATAQNLANHFLTLEKVTQ
ASIESLTQVSDVGVIVATHVRGFFDEQHNVDVVNALIEQDINWPALTPPSEDEQPLAGLT
YVLTGTLNTLNRNDAKARLQQLGAKVAGSVSAKTDALVAGEKAGSKLTKAQDLGIDILSE
GDLIALFDKYNA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcagcattagtgagcaaattaatcatcttcgtagtacgttagagcaacacaac
tacaattattatgtccttgatacacccagtattcctgatgcagaatacgacagactattg
cgcgagttaagcgcccttgaaagagaaaacccagaatttttaacgccagactcacccact
caaaaggtaggaggcgctgcgctgagtaaatttgaacaagttgctcaccaagtgcctatg
ttatcgcttgataacgcctttagtgaagaagaatttagcgcctttaaccgccgtattaaa
gagcgtttaatgagccaagatgagctcactttttgttgtgagcctaagttagatggcttg
gctgtgtcgattatttaccgtgacggcgtgcttatgcaggccgcaactcgtggcgatggt
tttacaggcgagaacattacacaaaatgtaaaaacaatccgcaatgtgccccttaagctg
cgtggcgattaccccgcagagcttgaagtacgtggcgaagtatttatggatagcgcaggg
ttcgaaaaactaaacagcgaagccgaaaaacgtggcgaaaaagtatttgtaaatcctcga
aatgcagccgcaggtagtctacgccagcttgattcaaaaattaccgctaagcgcccgcta
atgttttatgcgtatagcacagggctggtggccgatggcacaatccctgaggatcactac
caacaattggcaaaattaactgattggggtttaccgctgtgcccagaaacaaagttagtt
gaaggtacgcaagcggctttagattactacactgatattttaacgcgcagaagcgagctt
aaatatgaaattgatggcgtagtaattaaaataaaccaaaaagccttacaagagcgttta
gggtttgttgcacgtgcaccgcgctgggcaattgcttataagtttcctgcgcaagaagaa
ataacccagttacttgatgtagaatttcaggttggccgcacaggcgctataacgccggta
gcgcgtttagagcctgtatttgtaggcggtgttacggtatcaaacgcaacgctgcacaat
ggcgatgaaatagcccgcttaggcgtaaaggtgggcgatacagtaattatacgccgcgcc
ggcgatgttattccgcaaattacacaagtagtacttgagcgccgcccagatgatgcacgc
gacattgtatttcctgccagttgccccatttgtgactcacacgttgaaaaagtagaaggc
gaggccgtggctcgttgtaccggtggcttagtgtgccaagctcagcgtaaacaagcgata
aagcatttcgcatcacgcaaagcgcttgatatagatggcttaggcgacaaaatagttgat
cagctggttgatagagagctggtaaaaacccccgcagatttatttatattaaaacaaggt
cactttgagtcacttgagcgtatgggccctaagtcggctaaaaacttagtggatgcgctt
gaagttgcaaaaacaactacgcttgcaaagtttttatattcgctgggtattcgtgaggta
ggcgaggccacagcgcaaaacttagcaaatcattttttaacacttgaaaaggtaacccaa
gcaagtattgaaagccttacacaagtgagcgatgtaggcgttattgtagcaactcatgtt
cgaggcttttttgatgagcaacataatgtagatgtggttaatgctttaattgaacaagat
attaattggccagcgctaacgccgccttcagaggatgagcaacccttagctgggctaacc
tatgtattaactggcactcttaatactttaaaccgaaacgatgctaaagcacgcttacaa
cagttaggtgcaaaagtagccggtagtgtgtcggctaaaacagatgcattggtggcgggc
gaaaaagccggctctaaattaactaaagcacaagatttaggcatagacatacttagcgaa
ggcgacttaattgcactgtttgataagtacaatgcttag
DBGET
integrated database retrieval system
