Pseudobutyrivibrio xylanivorans: FXF36_13380
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Entry
FXF36_13380 CDS
T06217
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pxv
Pseudobutyrivibrio xylanivorans
Pathway
pxv03030
DNA replication
pxv03410
Base excision repair
pxv03420
Nucleotide excision repair
pxv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pxv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FXF36_13380 (ligA)
03410 Base excision repair
FXF36_13380 (ligA)
03420 Nucleotide excision repair
FXF36_13380 (ligA)
03430 Mismatch repair
FXF36_13380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pxv03032
]
FXF36_13380 (ligA)
03400 DNA repair and recombination proteins [BR:
pxv03400
]
FXF36_13380 (ligA)
Enzymes [BR:
pxv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FXF36_13380 (ligA)
DNA replication proteins [BR:
pxv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FXF36_13380 (ligA)
DNA repair and recombination proteins [BR:
pxv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FXF36_13380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FXF36_13380 (ligA)
MMR (mismatch excision repair)
DNA ligase
FXF36_13380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FXF36_13380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
Nlig-Ia
HHH
5_3_exonuc
Amidohydro_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QFJ56262
UniProt:
A0A5P6VV50
LinkDB
All DBs
Position
1:complement(2958457..2960463)
Genome browser
AA seq
668 aa
AA seq
DB search
MMLIEEYKKLVDTIDYHMDKYYNDDEPEISDFEYDQLMLQLKEAEKEHPEWVTADSPTQK
IGGIAKREAGVKVTHDVPMLSIEDVFNKEDVTAWVEKVKSVHADATFSVEAKIDGLSMTL
RYEKDSQGKLKLKLAETRGDGLIGEDVTENALVIPDVNKYLDLPYDSLQLRGEVYMSHED
FDRYNEDQELKGGKLAANPRNLAAGTLRQLDANITKQRGLKMFVFNVQQGPEELTESHCK
GLDILAEHGVPVVFHKGCTTADEILAVIDEIGEKREEFEFDIDGAVVKIDQVAYRNDFPT
SAKYTSGHIAYKYPPEEKETKLLDVELSVGRTGRVNPTAIFEPIRLCGTTVSRATLHNQD
FIDELNIGIGDTIVVYKSGEIIPKIKEVNYSKRPEGVSTYKIPNICPACGGPVSRDADTA
DMKCSNPSCPAQLERHIINFVSRDAMDIRGFGEVYIIELVRRGYIKDIADIYSLKNKRDE
LIEEGIIGKEKNTDKLLGVIESSKQNDAVRLFTGFGIPNVGKAAAKALLGQFKDIEKIME
LSEEELMQVNDIGEISAKSIYDYLHDPVNIDIIGRLKAAGVNMVEEEKEGATDKLSGLTF
VITGTLPTMGRKECQELIELNGGKCAGSVSKKTSYLVAGEAAGSKLDKANSLGVTVLDEE
GLLSLINS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
ataatgttaatagaagaatataaaaaattagtcgataccatcgactatcacatggataaa
tactacaacgatgatgagccagaaatctctgactttgagtacgaccagttgatgcttcag
ctgaaggaggctgaaaaggagcacccagaatgggttactgctgattctccaactcagaaa
attggaggaatcgcaaagcgtgaagcgggagtgaaggttactcacgatgttccaatgctt
tctattgaggatgtttttaataaagaagacgttacagcctgggttgagaaggtaaagtca
gttcatgctgatgccactttttcagttgaggcaaaaatcgatggcctcagtatgacattg
cgatatgagaaggacagccaagggaagctaaagctaaagcttgcagagaccagaggtgat
ggtcttatcggtgaggacgttacggaaaatgcccttgtaattcctgatgtaaataaatac
ttggatttaccttatgacagccttcagcttcgtggcgaggtttatatgtctcatgaggat
tttgaccgctacaatgaggatcaggaactgaagggtggaaaacttgcagcaaatcctaga
aatcttgcggcaggaacccttcgtcagcttgatgcaaacatcaccaagcagcgtggcctg
aagatgtttgtatttaatgttcagcagggaccagaggagcttacggaaagccactgcaag
ggccttgatattttggctgagcatggtgtgcctgttgtattccacaagggatgtaccaca
gctgatgaaattcttgctgtcattgatgaaatcggtgagaagcgtgaggagtttgaattt
gatattgatggtgctgtagtaaagattgatcaggttgcatatcgtaacgattttccaacc
agcgctaaatatacaagcggccacattgcttacaagtatccaccagaggagaaggaaacc
aagcttcttgatgtggagctttctgttggtagaacaggcagggtgaatcctacagcaatt
tttgagccaattcgtttatgcggtactactgtcagtcgtgcgacccttcacaatcaggat
tttattgacgagctgaatatcggtatcggcgatactattgtggtatataaatctggagaa
attattccaaagattaaagaggttaattacagcaagcgtcctgagggggtgagcacctac
aagattccaaatatttgtccagcctgcggtggaccggtttcaagggatgcagacacggct
gatatgaagtgctctaatccaagctgtccagctcagcttgaacgccatataattaatttc
gtttcaagagatgctatggatatcagaggcttcggagaagtctatatcatcgaattagtc
agacgtggatatataaaggatattgcagatatttattcattaaagaataagcgagatgaa
ctcatagaagaaggtatcattggcaaggaaaagaatacagataagcttctaggggtaatt
gaaagttcaaagcaaaacgatgcagtaagattgtttactggatttggaattccaaatgtt
ggaaaagcagctgcaaaggcgttacttggacagttcaaggacatcgaaaaaatcatggaa
ctgtcagaagaagagcttatgcaggtgaatgatatcggtgaaatcagtgccaaatcaatt
tatgattatctgcacgaccctgtaaatattgacattataggcagattaaaggctgcaggt
gttaatatggtagaggaagaaaaagaaggcgctacagacaagctttcaggccttactttc
gtaatcaccggaacacttcctactatgggcagaaaggaatgccaagagcttattgaattg
aacggtggaaaatgcgcaggttctgtttctaagaaaactagttatttagtggctggagag
gctgctggaagcaaattggataaagctaattcattaggcgtaactgtacttgacgaggaa
ggcttactttcgttgataaatagttaa
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