KEGG   Paenibacillus yonginensis: AWM70_16820
Entry
AWM70_16820       CDS       T04810                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pyg  Paenibacillus yonginensis
Pathway
pyg03030  DNA replication
pyg03410  Base excision repair
pyg03420  Nucleotide excision repair
pyg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pyg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AWM70_16820
   03410 Base excision repair
    AWM70_16820
   03420 Nucleotide excision repair
    AWM70_16820
   03430 Mismatch repair
    AWM70_16820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pyg03032]
    AWM70_16820
   03400 DNA repair and recombination proteins [BR:pyg03400]
    AWM70_16820
Enzymes [BR:pyg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AWM70_16820
DNA replication proteins [BR:pyg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AWM70_16820
DNA repair and recombination proteins [BR:pyg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AWM70_16820
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AWM70_16820
   MMR (mismatch excision repair)
    DNA ligase
     AWM70_16820
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AWM70_16820
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 HHH Nlig-Ia PTCB-BRCT DNA_ligase_ZBD RNA_lig_T4_1 DZR_2
Other DBs
NCBI-ProteinID: ANS76037
UniProt: A0A1B1N3P6
LinkDB
Position
complement(3673554..3675566)
AA seq 670 aa
MDPMQRMEELVEELGKYNYHYYTLDEPLVSDKEYDALYDELVRLETETGMVLPDSPTQRV
GGELLSGFTPHRHLVPLWSLDKAQNEEQLLNWNNRVVKLTSDYNAKNPDNPLPPLSYAVE
LKFDGLTLNLTYTDGKLVQASTRGNGVVGEGILAQVKTIKSVPLTIPFRDGTIEVQGEGI
MNLSVLEAYNKQAAEPLKNARNAAAGALRNLDPKTTAKRKLSAYFYNVGYAENITFRDHR
EMMNFLRTNKFKVNPFISYFDDFSEVAAQLQQIQEQRSSLDYLIDGAVVKITDMRTREVL
GYTDKFPRWAVAYKFEAEETTTVLESVSWNVGRTGKITPLARVEPVELAGVTVQNCTLNN
VGDIERKNLKFALGTRVFIRRSNDVIPEILGKVPDEEEGEEIVYPENCPACGFPLQQRGA
HLFCDNRFGCRPQIVGRITHFASRDAMDIETFSDKTAGQLYDELTLREPADLYSLEFDSL
LKLERFGEKKARNLLDAIEASKSRDLASFLFALGIPNTGKSTTKLLADHFGSLEAVMAAS
VEELTALPDIGGIVAESIVSFFADPFNQASIHKMLERGVQAKAPEQAEPVRTDSYFSGKT
VVLTGTLHQLTRDEAAERLEALGAKVTGSVSKKTDLVIAGEKAGSKLTKAKDLGVEVIED
EDEFIRLLGD
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggatccaatgcagaggatggaagagctcgtagaggagcttggcaaatacaattatcat
tactatacgcttgatgagccgctggtcagcgataaggaatatgatgcgctgtacgatgag
ctggttcggctggagacggagaccggcatggtgctgccggattcgcctacgcagcgggtg
gggggagagctgctcagcggatttacaccgcaccggcatcttgtcccgctgtggagcctg
gataaagcccagaacgaagaacagctgctgaactggaacaaccgtgtcgtcaagctgacg
agcgattacaatgccaagaaccccgataaccctcttccgccgctttcttatgcggttgag
ctcaagttcgacggccttaccctgaatttgacctatacggacggcaagctggtgcaggca
tctacgcgcggcaacggggttgtaggcgaaggtattctggcccaggtgaagacgatcaaa
tccgtgccgctgaccattccgttccgtgacggaacgattgaagttcagggcgaaggtatc
atgaacttgtccgtgttggaggcgtacaacaagcaggcagcagagccgctgaaaaatgcc
cgcaacgccgccgcaggcgcccttcggaatctcgacccgaagacgactgccaagcggaag
ctgagtgcttatttttacaatgtgggatatgccgagaacatcaccttccgcgatcaccgc
gaaatgatgaatttcctgcgtaccaataagttcaaagtgaatccgtttatctcttatttc
gatgacttcagcgaagtggccgctcagcttcagcaaattcaggagcagcgcagctcgctg
gattacctgatcgacggagcagttgtgaagatcaccgatatgcggacccgcgaggtgctg
ggctacacggataaattcccgcgctgggctgtggcttacaagtttgaggcggaagaaacg
acaaccgtgctggaatccgtatcctggaacgtaggacgcaccggaaaaatcacgcccctc
gcccgcgtagaacccgtggaactggcgggggtaaccgtgcaaaactgtaccctgaacaac
gtcggggacattgaacgcaagaatctcaaatttgcgctcggcacacgcgtcttcatccgc
cgctcgaatgatgtgatccctgaaattctcggtaaagtgcctgacgaggaagagggggaa
gagatcgtttatccggagaactgtccagcctgcgggttcccgctgcagcagcgcggcgcg
catttgttctgcgacaatcggtttggctgccgtccgcagattgtggggcgcattacccat
tttgcttcccgtgatgctatggatattgagacgttcagcgacaaaaccgccgggcagctg
tatgacgagctgacgctccgtgaacccgccgacctgtattcgctggagttcgacagcctg
ctgaagctggagcgttttggcgagaagaaagcccgcaacctgctggacgccatcgaagcg
agtaaaagccgtgacctggcgtcgttcctgttcgcgcttggcattccgaatacaggcaag
tcgacgaccaagctgctcgccgatcatttcggctctcttgaggcggtgatggcagcaagc
gtggaggaattaacagcgctgccggatatcggcggcattgtggcggagtcgattgtgagc
tttttcgctgatccgtttaatcaggcttccattcataaaatgctggagcgcggcgttcaa
gccaaagcgcctgagcaagccgagcctgtccgcaccgattcttatttcagcggcaaaacc
gttgtcctgaccggtacgcttcatcaattgacgcgcgacgaagccgccgaacgtctggag
gccctcggcgcgaaagtgaccggcagcgtctccaagaagacggacctcgtcatcgccggc
gagaaagccggcagcaagctgaccaaagccaaagacttgggcgttgaggtgattgaggat
gaagatgaatttatccggctgctgggagattga

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