Phormidium yuhuli: NEA10_18920
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Entry
NEA10_18920 CDS
T08410
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pyh
Phormidium yuhuli
Pathway
pyh03030
DNA replication
pyh03410
Base excision repair
pyh03420
Nucleotide excision repair
pyh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NEA10_18920 (ligA)
03410 Base excision repair
NEA10_18920 (ligA)
03420 Nucleotide excision repair
NEA10_18920 (ligA)
03430 Mismatch repair
NEA10_18920 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pyh03032
]
NEA10_18920 (ligA)
03400 DNA repair and recombination proteins [BR:
pyh03400
]
NEA10_18920 (ligA)
Enzymes [BR:
pyh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NEA10_18920 (ligA)
DNA replication proteins [BR:
pyh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NEA10_18920 (ligA)
DNA repair and recombination proteins [BR:
pyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NEA10_18920 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NEA10_18920 (ligA)
MMR (mismatch excision repair)
DNA ligase
NEA10_18920 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NEA10_18920 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
RNA_ligase
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
USR90868
UniProt:
A0ABY5ANT2
LinkDB
All DBs
Position
complement(4389721..4391766)
Genome browser
AA seq
681 aa
AA seq
DB search
MSQPSSQLQDQTRKLRQQLQEAAHAYYVLDAPIMEDEVYDRLYRDLQAIEQDYPHLITPD
SPTQRVGDKPAAQFTSVRHTIPLYSLDNAFTLEEFARWQERWQTRLEERITPEYICELKI
DGSALALTYEDGVLVRGVTRGDGETGEEITPNVKTIRSIPLRLQGEKIPPRVEVRGEAFL
PLETFERLNRERQENQDPPFANPRNAAAGTLRQLDPQIVAQRQLQFFAYTLYCPSDEGDR
PFKTHQEALQRLQDLGFWVNPHRQRVQSLQEVQAYYEQWEQQRRELPYLTDGVVVKLNDI
PLQERLGFTQKAPRWAIALKYPAEEVPTTVESVSFQVGRTGAVTPVANLKPVQLAGTTVS
RASLHNGDRLRELDLHYGDTVVVRKAGEIIPEVVRVLPKLRPEGAEAVKMPNHCPECQEP
LIKPQDEAVTRCINRSCPAILRGALKHWGSRGALDIDGLGEKLISQLCDRPFLNSLADLY
RLRAEDLSHLERLGHKSATKLIKSIQNSKSQPWSRVLYGLGIPHVGAVNAQTLAQAFPTV
EALAQASPEEIAQIKGIGPEIAGAIAHWFQLKAHQDLIEQLQAVGVSLQRHPEAETVPES
PQPLAGQTFVLTGTLPNLTRTQAKTLIEEAGGKVTSSVSSKTNYVVVGENPGSKQAKAEA
LAIPQLSEAQLRELVGLSPQA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgagccaacctagttcccaactccaagaccagactcggaaactccgccaacagttacaa
gaggcggcccatgcctactatgttctcgatgctcccattatggaagatgaggtgtacgat
cgcctctaccgagacctacaagccattgaacaggactatccgcacctgattacccccgat
agtcccacccagcgcgtcggcgataaaccggcggcccagtttacctccgttcgccacact
atccccctctacagtctggataacgccttcacccttgaggagttcgccagatggcaagag
cgttggcaaactcggctggaggaacggattacccctgagtatatctgtgaactgaaaatt
gatggttcagcgttggccctaacctatgaagatggagtcctcgtgcggggggtcacccga
ggggatggggaaactggggaggagattacccccaatgtgaaaacgattcgttcgattccc
ctgagacttcagggagagaagattccgcctcgggtggaagtccggggtgaggccttcctt
cccttggagacgtttgagcgtttgaaccgggaacgtcaggagaaccaagacccccccttt
gctaatccccgcaatgcagcggcgggaaccctacgacaactcgatcctcagattgtggct
cagcgtcagcttcagttttttgcctataccttgtattgtcccagtgatgagggcgatcgc
ccctttaagactcatcaagaggctctacaacggctacaagacttgggcttttgggtcaat
cctcaccgccaacgggttcagagtcttcaagaggttcaagcctattatgagcaatgggag
caacagcggcgtgagcttccctatttgaccgatggtgtggtggtgaaactcaatgatatc
cccctgcaagagcgcctcggctttactcaaaaagccccccgttgggcgatcgccctcaaa
tatcccgctgaggaagttcccaccacggtcgaatcggtcagtttccaagtggggcgcacg
ggggccgttaccccagtggctaacctcaaaccggttcaactggccggaaccacggtttcc
cgagccagtcttcacaatggcgatcgcctacgggaattggacttacattatggggatacg
gtcgtggtgcgtaaagctggggaaattatcccggaagtggtgcgagtgctgcctaaattg
cgccctgagggggcagaggcggtcaaaatgccgaatcactgccccgagtgccaagaaccc
ctaattaagccccaagatgaggcggtaacgcgctgtatcaatcgctcatgtccggcgatt
ttgcggggggccctgaaacattggggcagtcggggggcgttggatattgatggcttaggg
gagaaactgattagccaattgtgcgatcgccctttcctcaactccctggctgacctctat
cgcttacgggcagaagacttaagccatttagagcgcctcggacataaatcggccacaaag
ctcatcaagtccattcagaactccaaatcccaaccctggtcgcgagtgctgtatggcctg
gggattccccatgtgggggcggtgaatgcccaaactctggctcaggccttccccacggtc
gaggcgttagctcaagccagtcccgaggagattgcccagattaagggaattgggcccgaa
attgccggggcgatcgcccactggttccaactcaaggcccatcaagacctaattgagcaa
ctgcaagcggtgggtgtttccctacagcgtcatcccgaagccgaaaccgtccctgagtca
ccccaacccctcgccggtcaaacctttgtcctaacgggaaccctacccaacctcacccgg
acgcaggcgaaaaccctcattgaagaggctgggggcaaggttaccagctccgtcagttct
aaaacgaactatgtcgttgttggggagaatcccggttccaaacaggctaaagccgaagcc
ttggcaatcccacaactttcagaagcccaactacgggagttagtggggttatccccccaa
gcttga
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integrated database retrieval system
