Pseudomonas yamanorum: AK972_0222
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Entry
AK972_0222 CDS
T05821
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pym
Pseudomonas yamanorum
Pathway
pym03030
DNA replication
pym03410
Base excision repair
pym03420
Nucleotide excision repair
pym03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AK972_0222
03410 Base excision repair
AK972_0222
03420 Nucleotide excision repair
AK972_0222
03430 Mismatch repair
AK972_0222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pym03032
]
AK972_0222
03400 DNA repair and recombination proteins [BR:
pym03400
]
AK972_0222
Enzymes [BR:
pym01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AK972_0222
DNA replication proteins [BR:
pym03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AK972_0222
DNA repair and recombination proteins [BR:
pym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AK972_0222
NER (nucleotide excision repair)
GGR (global genome repair) factors
AK972_0222
MMR (mismatch excision repair)
DNA ligase
AK972_0222
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AK972_0222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
HHH_5
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AMW81022
LinkDB
All DBs
Position
complement(219631..221319)
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AA seq
562 aa
AA seq
DB search
MMTLPMRLLFFFLLSVSSLIAWAQECPDWEADHAQAQIATLAQQVHLWDDSYHRLGQSLV
SDELYDQARQRLAQWRSCFAPSAPAKDNPLASARGTIAHPTPHTGLEKLLDDNAVQTWLS
SRQDVWIQPKVDGVAVTLVYRKGRLSRVISRGDGRLGQDWSASARRIPGIVQQLPEPVDL
LLQGELYWRLNDHVQAAKGGLGARSKVAGLMNRRQLSEAEAAGIGLFVWAWPHGPEDFPK
RLSQLAQWGFTDSRRYSHPIKDFTEAAHWRSYWQSHPLPFASDGVVLHQSQRAPAERWRV
SSPYWAVAWKYPVVKALAHVRKVHFKIGRTGRITSILELEPVLLDDRKISRVSVGSLKRW
RELDVRPGDQVSISLAGQVIPRLDHVVLRSQPRVELQIPQANNFHPLSCWKLAPGCEEQL
LARLTWLSGAQGLALPHIGRETWNTLIQAGLIGGLLDWLTLDEAELANIDGLGERSSARL
LDSLRSARQRPFAQWLMALGVPPTARNNLQGGWQTLAAKDTQAWLAEDGIGPGRAAQLSA
FFRDPQVLALGETLRAAGIDGF
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgttgcctatgcgcttactgttcttctttttactcagcgtctcgtcgcttatt
gcgtgggcgcaggaatgtcccgactgggaggccgatcacgcccaggctcagatcgccacc
ctggcgcagcaagtccacctctgggatgacagctatcaccgactcggccagtcattggtc
agcgatgaactctatgaccaggcccgccagcgccttgcccaatggcgcagttgtttcgcc
ccctccgcgccggccaaggacaatccgctggccagcgcgcgaggtaccatcgctcacccg
acgccacacaccggcctggaaaaactgctggacgacaatgccgttcaaacctggctgagc
tctcgccaggacgtgtggattcagcccaaggtcgatggcgtcgccgtcaccctggtttac
cgcaaaggccgactgagccgggtcatcagccgtggcgatggccggctggggcaggattgg
tcagcctccgcccgcaggattcccgggatcgtccagcaactgcccgaacccgtagacctg
ttgttgcaaggcgaactctattggcgactgaatgaccacgttcaggccgccaaaggtggc
ctcggcgcccgcagcaaagtggctgggctgatgaaccgccgtcagttgagcgaagccgaa
gccgccggaatcggcctgtttgtatgggcctggccccacggtcccgaggattttcccaaa
cgactgagccagcttgcgcaatggggcttcaccgacagtaggcgctacagccacccgatc
aaggactttaccgaagcggcgcactggcgcagctactggcaaagccacccactgcccttt
gccagcgacggcgtggtgttgcatcaaagccagcgggcgccggccgagcgctggcgggtc
agttcgccctattgggcggttgcctggaaatacccggtcgtcaaggcgctggcccatgtg
cgcaaggtacatttcaagattggtcgcaccgggcgcattacctccatcctggagttggag
ccggtactgctggatgaccggaaaatcagccgggtcagcgttggctccctgaaacgctgg
cgggaactggatgttcgcccgggcgaccaggtgtccatcagccttgccggccaggtcatt
ccgcgtcttgaccacgtcgtgctgcgcagccagccacgggtcgagctgcagatcccccag
gccaacaactttcatccgctgagctgctggaaactggccccaggctgtgaggaacaattg
ctcgcgcgcctgacctggctgagcggcgcccaggggctggccctgccacatatcggccgt
gaaacctggaacactttgattcaggccggtctaatcggcgggctgctcgattggttaacc
ctggatgaggcagagcttgctaacattgatggcttaggtgaacgcagcagcgcacgttta
ctcgacagcttgcgcagcgcccggcagcgaccgttcgcgcaatggctgatggccctggga
gtaccgcccacggcccgcaacaatctacaaggcggctggcaaaccctggccgccaaagac
actcaagcctggctggccgaagacggcataggcccgggccgcgcggcgcaactgagcgct
ttttttcgcgacccgcaggtgctggccttgggtgaaacattacgggctgccgggatagat
ggtttttga
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