Herpailurus yagouaroundi (jaguarundi): 121033135
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Entry
121033135 CDS
T07555
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pyu
Herpailurus yagouaroundi (jaguarundi)
Brite
KEGG Orthology (KO) [BR:
pyu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pyu03036
]
121033135 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pyu03400
]
121033135 (SMCHD1)
Chromosome and associated proteins [BR:
pyu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
121033135 (SMCHD1)
DNA repair and recombination proteins [BR:
pyu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
121033135 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_7th
Ig_SMCHD1_6th
Ig_SMCHD1_2nd
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
121033135
NCBI-ProteinID:
XP_040335218
LinkDB
All DBs
Position
Unknown
AA seq
2002 aa
AA seq
DB search
MAAAGGGGPSVGTGEDGGGDGCRTVYLFDRREKESELGDRVLQVEERSDYARFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLILEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEVKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLMDPPFRVGVPFNI
PLEFQDEFGHTSQLGNDIQPVFEASGLSLHYEEITKGPNCVIRGVTARGPVNSCQGKNFN
LKVILPGLKEDTQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITTQ
PKLIVHCKFFGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGEREIHI
TSALADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGIAGVGLDS
SHLKTTFQENTQSISVKGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKINLVKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHVMQVRAIYNKSNIEGPIIKLMILPDPEKPIRLNIKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWQLSNSGNRPPANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCVQFGFMMDKANILNSEQIIVDVLPNEPVKLVPKIQPATPAVS
NVRSVASRTLAKDLHLIITDDYNNQTGIDLVGTVVATIKGSNEEDTDTPLFIGKVRTLEF
PFVKGSAEITNLVLAESSPGRDSTEYFIIFEPQLPALSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQVSKNIIMYRSLFEASKQLLDEMKCRVEEAKLKEAQLQTELKTHNIDIPTTQ
QMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKATGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKP
IGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLVLGEQIDLLQQYRTAVNKLNNVI
EDLNRQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKGNDSLRHPAKVEMTDCP
IPPKRMRREASRQNRIITKSDV
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtgggaactggagaggacggcggaggcgac
ggctgcaggacggtgtacttgtttgaccggcgggaaaaggagtccgagctcggggaccgg
gtgctgcaggtcgaggagcgctcggactacgcaaggttccgcgcctctgtgtgtcagaca
cttggcatttcacctgaagagaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgacactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactacttacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtggcatgtatgagtattacgcaagtgaaggacaaaatcctttgccattt
gctcttgccgaattaattgacaattcattgtctgctacttctcgaaacactggtattaga
agaatacagatcaaattgctttttgatgaaacacaaggaaaacctgccgttgcagtaata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgtccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gaacttgtgctttcgaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatcttagaggagaaagaaaaagatagctttactgctgtggtt
atcacaggagtacaaccagaacacatacagtacttgaaaaattattttcttctttggaca
agacagttagcgcatatttatcattactatattcatggcccaaaaggcaatgaaaaacgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatagaagatgacatgcagacgttgtat
ataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattattcgataccaccctttcttgtatgatagagaaacttaccccgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgttttatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagattttgactggtgtactcctccgaagaagagagggcttgcgccaatt
gaatgttacaatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagacaagaacacccttttcaca
aggattttaaatggacaggaacagcgaatgaaaattgatagagaatttgctttatggctg
aaggactgtcatgagaagtatgacaaacaaataaaatttacatcttttaaaggaataatt
acacgtcccgatcttccttctaaaaagcagggcccctgggcgacatactcagcaatagaa
tgggatggaaaaatatataaagcaggacagctggtcaagacaatcaagacacttcctctc
ttttatggaagcatagtaaaattttttctttatggtgatcatgatggagaagtatatgcc
acaggaggagaggttcagattgcaatggaacctcaagcactgtatgatgaagtaaaaact
gtgccaattgcaaagctcgataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattatcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattaggcctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaagggggaagcaatgcagaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgaactcaaagttatattgcattcttcaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattatacattgaaattacaagttgtattgaatgaaagtaatgcagacacg
tatgcaggaagaccgctaccatcaaaagcaattaaattttctgttaaagagggtaaacca
gagaagttttcatttggtcttatggatcctccttttcgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactaggaaatgatattcagcca
gtttttgaagcaagtggtttatctttgcattatgaagaaataaccaaaggaccaaattgt
gtaattcgaggtgttacagctaggggccctgtaaactcttgtcaaggcaagaattttaat
ttgaaggttattctgccgggtttaaaagaagacacacagattttaaaaattagattacta
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttctggatgaatcagacaatataacaacacaa
ccaaaattgattgttcattgtaagtttttcggggctccaaaccttccagtctacgttgta
gactgcagcagttctggaaccagtattttaacaggatctgcaattcaagtgcagaacatt
aaaaaagaccagactctgaaagcaaaaattgaaatacctagttgtaaagatgtggcaccc
gtggagaagactattaagttgcttcctagtagccatgttgcgagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gatgttatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatccacata
acatcagctttagcagataaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctgcttcctgatgtacaagtaccgacatctgtgaaagatatgcgctat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaaggcca
cttcctgatgagcctaaacatttaaaatgtgagttaaaaggaggaaaaacagtacaaatg
ggccaagagcttcaaggagaaatagttgtaatagttacagatcagtatggaaatcagatt
caagcattttcaccaagttctttatctgcattgggaattgctggggttggacttgacagc
tcccatttgaaaactacttttcaggaaaatacacaaagtataagtgtaaaaggcatcaaa
tttattccaggccctcctggaaataaggatctttgttttacttggcgtgaattttctgac
tttattcgagtgcagctaatttctggaccaccagcaaaacttctccttatagactggcca
gaattaaaggagtccattccagtgattaatggaagagaattacagaatcctctcattgtt
caactttgtgatcagtgggacaatccagcacctgtaccacaggtcaaaataaatcttgtg
aaagctaacaatttaaagcttactccttcaaaccaacaacataaaacagatgaaaggggc
agggctaatttgggagtgttcagtgtttatgcccctagaggagaacatgtgatgcaggtt
agagccatttataacaaaagtaacatagaaggacctataattaagttaatgattcttccg
gaccctgaaaaacctattcgtctcaatattaaatatgacaaagatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcatcaaa
aatattaatccagcacgtatttccatgaaaatgtggcagctgtctaacagtgggaaccga
ccaccagcaaatgcagaaacatttagttgtaataaaataaaagataatgacaaagaagat
ggctgtttctacttcagggataaagcaattcctaacaaagtggggacctattgtgtccag
tttggttttatgatggataaagcaaatattcttaacagtgaacagattatagttgatgtt
ctacctaatgaacctgtgaagttagttcctaaaatccagccagctacaccagctgtttca
aatgttcgttcagttgccagtaggaccttggccaaagatttacatcttattattacggat
gactacaataatcaaactggaattgatttggttggcactgtagtagctacaattaaaggt
tctaatgaggaagatacagatacaccactctttattgggaaagttagaacgctggaattt
ccctttgtgaaaggctcagctgaaatcacgaatctagtgctggcagaaagtagtcctgga
agggatagtactgaatattttattatatttgagcctcagctacctgctctatcaagaaca
ttagaaccatatatcctaccctttatgttttacaatgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccaggtatctaagaatattataatgtacagaagttta
tttgaagccagcaaacagcttcttgatgaaatgaagtgccgagttgaagaagcaaaatta
aaagaggctcagttgcaaactgaactaaaaacacataatattgacattcctacaacacag
cagatgccgcacattgaagcacttttgaaaagaaaactatcagaacaggaagaactgagg
aaaaaacctagaagatcatgtactcttccaaactatactaaagccactggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgacagagccgcaatggttatttcttgg
catctggcgagtgacatggactgtgttgtcaccctgaccaccgatgctgcacgtcgtatc
tatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaatggaaaattgtattttaaaccc
attggagatccagtctttgcccgagatttgttaacatttccagacaacgtagaacattgt
gaaacagtattcggtatgctgttaggagacaccattattttggataatttggatgctgcc
aatcattacagaaaagaggttgttaaaattacacactgccctacactgctcaccagagat
ggagatcgcattcgaagtaacggaaagtttgggggccttcagaataaagctcctccaatg
gataaacttcggggaatggtatttggagctccaataccaaaacaatgcctggtcttaggg
gaacaaatagatcttcttcaacagtatcgtactgctgtgaacaagttgaacaatgtgatt
gaggaccttaaccgtcagttagagtaccttcacactcctgatatgaagaagaaaaaacaa
gaacttgatgaacaagagaaaaatctgaaactaattgagcagaaactaggtatgactccc
acgcgtaagggtaatgactcattgcgccatccagcaaaggttgaaatgacagattgtcca
attcctcctaaaagaatgagaagagaagcttcaagacaaaataggattataaccaaatca
gatgtgtga
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