Pyramidobacter sp. YE332: RAH42_05290
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Entry
RAH42_05290 CDS
T09677
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pyy
Pyramidobacter sp. YE332
Pathway
pyy03030
DNA replication
pyy03410
Base excision repair
pyy03420
Nucleotide excision repair
pyy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RAH42_05290 (ligA)
03410 Base excision repair
RAH42_05290 (ligA)
03420 Nucleotide excision repair
RAH42_05290 (ligA)
03430 Mismatch repair
RAH42_05290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pyy03032
]
RAH42_05290 (ligA)
03400 DNA repair and recombination proteins [BR:
pyy03400
]
RAH42_05290 (ligA)
Enzymes [BR:
pyy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RAH42_05290 (ligA)
DNA replication proteins [BR:
pyy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RAH42_05290 (ligA)
DNA repair and recombination proteins [BR:
pyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RAH42_05290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RAH42_05290 (ligA)
MMR (mismatch excision repair)
DNA ligase
RAH42_05290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RAH42_05290 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
zf-NADH-PPase
RNA_ligase
RUBY_RBDX
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WOL41056
LinkDB
All DBs
Position
complement(1141626..1143662)
Genome browser
AA seq
678 aa
AA seq
DB search
MEQEKLDRYHWLVDELNRHGRLYYVLDAPEIEDDEYDALMREMLQFEREHPDLIRDDSPS
KRVGGTVLEAFEKVAHAKPMLSLEDVFSKGELHDWLQRAAEGVGQPWIPWCCELKIDGLA
VSLIFEDGKFVQASTRGDGIVGEDVTENLKTVKDLPLRLLGDVPGHLELRGEVYMSKEGF
ARLNAAREEAGLPLFANPRNAAAGSLRQLDTAVAAKRNLRLFTYYVQDAESYGLHSQSEV
LGWLKARGLPVQRAWRRAGTEAEVLDFLERWSGERFSLPYATDGAVFKADPTEYWKILGN
NVKTPRWAVAYKYPPEERKTKLESIEISLGRTGVLTPVAILTPVLISGTVVKRASLHNDE
EIQRKDIRVGDQVWVRKAGEIIPEIVRVDTASRTGTEESFTMPATCPVCGAAVAKLPGEV
ALRCPNRSCPAQLTQGLIHFASRQGMDIRGIGDRLAEQLVQSGLVKSFGDLYALRVEPLI
RLDRMGEKSAGKLIQAIAKSKERPLKFLITALGIREVGAGVAAELAKRFSSLDEIAAADE
ERLAAVEGVGPVIAGSIKAFFGEEHNRRLIDELREAGVSMRSETAPEAPIGPLAGKTFVF
TGELSRMSRAQAQELVAQRGGKNVASVSKKTSYVVVGEAPGSKAEKALSLNVPTLNEEEF
FAMIDKLPQHMSGGTNDA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtggaacaggaaaaactggaccgctatcattggctcgtcgacgagctgaatcgtcatggg
cgcctctattacgttctggacgccccggaaatcgaggacgacgaatacgatgcgctgatg
cgcgagatgcttcagttcgaaagggaacatcccgacctgatccgcgacgactctccgtcg
aagcgcgtcggcggtacggtgctggaggcgtttgaaaaagttgcgcacgccaaaccgatg
ctcagcctcgaagacgttttctcgaagggagagcttcacgactggctgcagcgggcggca
gaaggcgtcgggcaaccgtggatcccctggtgctgcgaattgaagatcgacggcttggcg
gtgtctttgatcttcgaggacggcaaattcgttcaggcttcgacccgcggcgacggtatc
gtcggcgaggacgtcacggaaaatctgaaaacggtcaaagacctgccgcttcgcctcctc
ggcgatgtcccggggcatctggagctgcgcggcgaagtgtacatgagcaaagagggattc
gctcgactgaacgccgcaagggaagaagcggggctgccgcttttcgccaatccccgcaac
gcggcggcgggcagtttgcgacagcttgacacggcggtcgccgccaaacggaatctgcgc
cttttcacctactatgtgcaggatgcggaatcctacggcctgcacagccaatcggaagtc
ctcggatggctgaaagcccgtgggcttcccgtgcagagagcctggcgccgggccgggacg
gaagccgaggttctcgatttcctggagcgatggagcggcgaacgtttcagtctgccctac
gcgacggacggcgccgtgttcaaggccgatccgacggaatactggaagatcctgggaaac
aacgtcaaaacgccccgctgggccgtggcctataaatatccgccggaagagcgaaaaacg
aaactcgagagcatagagatttccctcggccgcacgggcgtgctcacgccggtggcgatt
ctgacccctgtcttgatctcgggaacggtggtgaaacgcgccagcctccacaacgacgag
gagatccagcgcaaggacatccgcgtcggcgaccaggtctgggtccgcaaagccggcgag
atcatccccgagatcgtccgcgtcgacaccgccagccgtacgggcacagaggaatctttc
acgatgcccgcaacgtgtcccgtgtgcggagcggccgtggccaagcttcccggcgaagtg
gcgctgcgctgtcccaacagatcctgtccggcgcagctgacccaagggctgatccatttt
gcctcccgccagggcatggacattcggggcatcggcgaccgtctggcggaacagctcgtc
cagagcgggctggtcaagagtttcggcgatctgtacgccttgcgcgtcgagccgcttatc
cgtctggaccgcatgggagaaaagtccgcggggaaactgatccaggccatcgcaaaatcc
aaagagcgcccgctgaaatttttgatcacggcgctggggatccgggaagtcggcgcggga
gtcgcggcggagctggcgaaacgcttttcgtcgctcgatgagatcgccgccgccgacgaa
gaacggctcgccgccgtcgagggcgtgggaccggtgatcgccgggtcgatcaaagcgttt
ttcggcgaagagcataaccggcggctcatcgacgaactgcgcgaagccggcgtatccatg
cggagcgaaacggcgccggaagccccgatagggccgctggccggcaagacgttcgtcttt
accggggagctttcgcgtatgtccagggcgcaggcgcaggaactcgtggcgcagcgcggg
ggaaaaaacgtcgcttccgtgagcaaaaagacgtcctatgtcgtcgtcggcgaggcgccg
ggcagcaaggccgaaaaagcgctcagcctgaacgtgccgacgctgaacgaagaggaattt
ttcgccatgatcgataaattaccgcagcacatgtctggaggaacgaacgatgcctag
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