Pseudomonas ogarae SWRI108: HU749_027885
Help
Entry
HU749_027885 CDS
T07889
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza03030
DNA replication
pza03410
Base excision repair
pza03420
Nucleotide excision repair
pza03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU749_027885 (ligB)
03410 Base excision repair
HU749_027885 (ligB)
03420 Nucleotide excision repair
HU749_027885 (ligB)
03430 Mismatch repair
HU749_027885 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pza03032
]
HU749_027885 (ligB)
03400 DNA repair and recombination proteins [BR:
pza03400
]
HU749_027885 (ligB)
Enzymes [BR:
pza01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU749_027885 (ligB)
DNA replication proteins [BR:
pza03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU749_027885 (ligB)
DNA repair and recombination proteins [BR:
pza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU749_027885 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU749_027885 (ligB)
MMR (mismatch excision repair)
DNA ligase
HU749_027885 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU749_027885 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QXH94582
LinkDB
All DBs
Position
6297761..6299434
Genome browser
AA seq
557 aa
AA seq
DB search
MPPFLYALACLVFIVTPAIAAPCPDWPTERARTEITALQQQIDTWDDSYHRLGQSLVADE
LYDQSRTQLGQWRRCFNLAAPDDPLRSTGGKVLHPVVHTGLEKLKDADAVGAWLHGREDV
WAQPKVDGVAVTLVYRKGRLHQAISRGDGVLGHDWTTNARKIGAIPQQLRQPIDLVVQGE
LYWRLEAHVQASSGSVNARGTMAGLMARSNLTVHDGVYIGLFVWDWPEGPETLPERMAAL
DALGFADTLDYNQPVRTLVDAEQWRDHWYRTPLPFASDGIVLHQSRRPPADRWQARAPFW
SVAWKYPYAQALAEVRKVHFKVGRTGRITPVLELERIRLDDRWIRRVSVSSLKRWEEMDI
RPGDRVAISLAGLTIPRLDSVVLRSVERQDLNVPAASDHHFLSCWQATPGCESQFLARLN
WLSGKHGLALPHVGPGTWEKLLAAGRLHGLLDWLTLDAAELANIDGFGERSSNRLLASLD
SARQRPFGQWLKALGLPPAGEARLEGPWQVLAERNTEQWQAEAGIGPGRAAQLSAFFRDP
QVLALSDELRSAGVDGF
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgccaccgtttttgtatgcactcgcctgtcttgtcttcattgtcactcctgcgattgcc
gcgccctgtcccgactggcccactgaacgcgcccggaccgagatcaccgcgctgcaacag
caaatcgacacctgggacgacagttatcaccgcctcggccaatcgctggtggccgacgaa
ttgtatgatcaatcccgcacacagttgggccagtggcgccgctgcttcaacctcgcagcg
cccgacgatccgctgcgctcaacgggcgggaaggtactgcaccccgtggtccataccggc
ctggaaaagctgaaggacgccgacgccgtgggggcctggctgcacggtcgggaggacgtc
tgggcccagccgaaagtcgacggcgtggcggtaaccctggtctatcgcaagggtcgcctg
catcaggcaatcagccgtggcgatggcgtcctcggacatgactggaccaccaatgcgcgc
aagatcggcgccatcccgcaacaactgcgccagcccatagacctggtcgtccagggcgag
ttgtactggcgcctggaggctcatgtccaagccagcagcggcagcgtgaacgcccgcggg
accatggcaggcttgatggcacgcagcaatttgacggtgcacgatggggtgtatatcggc
ctgtttgtctgggactggccggaagggccggagaccctgcccgagcgaatggccgcgctg
gacgcgttgggcttcgctgacaccctcgactacaaccaacctgtgcggacattggtcgat
gcagagcagtggcgcgatcactggtaccgcacaccgctgccattcgccagcgacgggatc
gtcctgcaccagagccgccgcccacccgccgaccgctggcaggccagggcgccattctgg
agcgtagcctggaaatacccgtatgcccaggcgctggccgaagtgcgcaaagtgcacttc
aaggtcgggcgtaccgggcgcatcacgcccgtactggagcttgaacgcatccggctcgac
gaccggtggattcgccgggtaagtgtcagttccctcaagcgttgggaggagatggacatt
cgccccggcgaccgggtcgctatcagtctggccgggctgaccatcccgcggctcgacagc
gttgtgctgcgcagcgtcgagcggcaggacctcaacgtccctgcggcaagcgatcatcac
ttcctgagttgctggcaagcgacgcccggctgtgaaagccagttcctcgcacgcctgaac
tggctcagcggcaagcacgggctcgccctgccccatgtcggccccggcacctgggaaaaa
ctcctggctgccggtcgactccacggattgctggattggttgacccttgatgccgccgag
cttgctaacattgacggcttcggcgaacgcagtagcaaccgcctgctcgccagcctggac
agcgcccggcaacgccctttcgggcaatggctcaaggccctgggcctgccgcccgcgggt
gaggcccggctggaagggccgtggcaggtgctggccgagcgcaatactgaacaatggcaa
gccgaggccggcatcggaccgggacgcgccgcgcaactgagcgcattttttcgcgacccg
caggtgctggccttgagtgacgaactacgctccgccggggtcgacggtttttaa
DBGET
integrated database retrieval system
