Pseudomonas zeae: HU754_010610
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Entry
HU754_010610 CDS
T07528
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pze
Pseudomonas zeae
Pathway
pze03030
DNA replication
pze03410
Base excision repair
pze03420
Nucleotide excision repair
pze03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU754_010610 (ligA)
03410 Base excision repair
HU754_010610 (ligA)
03420 Nucleotide excision repair
HU754_010610 (ligA)
03430 Mismatch repair
HU754_010610 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pze03032
]
HU754_010610 (ligA)
03400 DNA repair and recombination proteins [BR:
pze03400
]
HU754_010610 (ligA)
Enzymes [BR:
pze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU754_010610 (ligA)
DNA replication proteins [BR:
pze03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU754_010610 (ligA)
DNA repair and recombination proteins [BR:
pze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU754_010610 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU754_010610 (ligA)
MMR (mismatch excision repair)
DNA ligase
HU754_010610 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU754_010610 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QXI13838
UniProt:
A0A9E6TDI5
LinkDB
All DBs
Position
2393609..2395966
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAKNRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITNDSPTQ
RVGSVALTAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGEGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSH
DISDTHIGNLKQLQKWGMPISHELKLAKGIGECLDYYRDIGARRNSLTYEIDGVVFKVNS
IADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVMDRRPENARAVQIPESCPVCGS
HVERTQLIKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQ
LVDEGLVSSPADLYALKFDDIVDLEGFAEVSSNKLLAAIEDSKKPGLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDAHNQQVIAELLGHGL
QIQDQGELGAEFAASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQAL
PEKQANSVREFFALPENRQLAEASEKQLRDFGMHWQSEKKIVEGLPLSGETWVLTGKVEL
MSRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVMDEEAFIAFLKT
HGVAV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaaaaaccgcattctcgagctacgcgctgaactcgatcagcacaactac
cgttaccacgtcctcgacgagccgagcattccggatgccgagtacgaccggttgttccac
gagctcaaagcgctggaagcggccaacccggaactgatcaccaacgactcgccgacccag
cgcgtcggcagcgtggcgctgaccgcgttcacccaagtgcgtcacgaagtgccgatgctc
agcctcggcaacgccttcgaagaaaccgacatgcgcgaatttgatcgccgggtgaccgaa
ggtctggacctgccggccggcgatctgttcggtggcggtgcggcggtggagtacagctgc
gagccgaaacttgatggtctggcggtcagcctgctttatcaggacggcgtgctggtacgc
ggcgccacgcgcggcgacggcaccactggcgaagacatcagcgtcaacgtgcgcaccgtg
cgcaacattcccctgaaactgcatggcgaaggctggccggcgaccctggaagtgcgcggt
gaagtgtttatgtccaaggccggtttcgagcgcctcaacgcctcgcaactggaagtcggc
ggcaagactttcgccaacccgcgcaacgctgccgctggcagcttgcgtcagcttgattca
aagatcaccgccaaccgtccgctggaattctgctgctacggcatcggtcaggtctcccac
gatatttccgacacccacatcggcaacctcaagcagttgcagaagtggggtatgccgatc
agtcacgaactgaagctggccaagggcatcggcgaatgtctcgattactaccgcgacatc
ggcgcgcgccgtaactcgctgacctatgaaatcgacggcgtggtgttcaaggtcaacagc
atcgccgatcaacgcgaactgggcttccgcgcccgcgaaccgcgttgggcgatcgcgcac
aaattcccggctatggaagaactcaccgagctgctcgacgtcgagtttcaagtcggtcgt
accggtgctgtcaccccggtcgctcgtttgaaaccggtcaaggtcgccggcgtcactgtg
gccaacgctacgctgcacaacatggatgaagtcgcgcgtctgggcctgatgatcggcgac
accgtgatcatccgccgcgccggtgatgtgattccgcaggtggtgcaagtggtcatggat
cgccgtcccgaaaatgcgcgcgcggtgcagattcccgagagctgcccggtgtgcggctcg
cacgtcgagcgcacgcaactgatcaagcgcagcaaaggcaaggaaaccgtcagcgaaggc
gcggtgtatcgctgcgtgggccgactggcctgtggcgcgcaactgaagcaggcgatcatt
catttcgtctcgcgtcgggcgatggatatcgaaggcttgggcgacaaaagcgttgagcaa
ctggtcgatgaaggtctggtcagttcgccggccgatctgtatgcgctgaagttcgacgac
atcgtcgatctggaaggttttgccgaggtgtccagcaacaagctgctcgcggcgattgaa
gacagcaagaaaccggggctggcgcgcttcatctatgcgctgggcattcccgatgtcggc
gaggagaccgccaaagtgctggcgcgctcgctgggttcgttggagcgcgtgcagcaggca
ttgccgcaagtgctgacgtatctgccggatgtggggctggaagtggcgcacgagattcac
agcttctttgaagatgcgcataaccagcaggtcatcgctgagttgctgggccatggtctg
cagattcaggatcagggtgagttgggcgccgagttcgcggccagcactacgttgggtggc
tttctcgacaagctgcacattccttcggtcggccccggcggcgcgcagaagctggcggac
aagttcggttcgctggaagcggtgatgaatgctgactggctggacatgcgtcaggccttg
ccggagaaacaggcgaattcggttcgcgagttttttgcgctgcctgagaaccggcaactg
gctgaggcatccgaaaagcaactgcgtgatttcggcatgcactggcagagcgagaagaag
attgttgagggcttgccgctgtccggcgagacctgggtgctgaccggcaaggttgagctg
atgagccgtgatgtcgccaaggaacatctggaaagccttggcgccaaggttgccggttcc
gtgtcggcgaagactcattgtgtggtcgcaggccccggcgctggttccaagctgaccaag
gccaatgagctgggcgtgaaggtgatggacgaagaagccttcatcgccttcctcaaaact
cacggcgtcgccgtttaa
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integrated database retrieval system
