Candidatus Phytoplasma ziziphi: CWO85_03540
Help
Entry
CWO85_03540 CDS
T05675
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pzi
Candidatus Phytoplasma ziziphi
Pathway
pzi03030
DNA replication
pzi03410
Base excision repair
pzi03420
Nucleotide excision repair
pzi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pzi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CWO85_03540
03410 Base excision repair
CWO85_03540
03420 Nucleotide excision repair
CWO85_03540
03430 Mismatch repair
CWO85_03540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pzi03032
]
CWO85_03540
03400 DNA repair and recombination proteins [BR:
pzi03400
]
CWO85_03540
Enzymes [BR:
pzi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CWO85_03540
DNA replication proteins [BR:
pzi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CWO85_03540
DNA repair and recombination proteins [BR:
pzi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CWO85_03540
NER (nucleotide excision repair)
GGR (global genome repair) factors
CWO85_03540
MMR (mismatch excision repair)
DNA ligase
CWO85_03540
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CWO85_03540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
Nlig-Ia
DUF7501
Motif
Other DBs
NCBI-ProteinID:
AYJ01544
UniProt:
A0A660HNF6
LinkDB
All DBs
Position
complement(746022..748016)
Genome browser
AA seq
664 aa
AA seq
DB search
MTLEIKKKIKSLTDTLHQANYNYYNLSKTDLSDYQYDALLKELSVLEKKYPEYKLSYSPT
LKVGGFLSSKFKKVEHIVPMLSLSNVFNFDELKLFCNRLLKINIPFCFIIEPKIDGVAIS
LKYEKGILVQAATRGNGYVGELITENIRTIKNIPLKIKEEIDLEVRGEILFDHDSFEKLN
KEQKEKNKILFSNPRNAASGTLRQLNSSIVAQRNLSSFIYSIIDPPFFIKTQKEALDFLK
KNGFSVNPYYDVVFSFEQLKEKINYYKELKDKLPYDIDGIVIKVNELILHNSIGYTSKCP
KWATAYKLNSLKGETIIQNIEFQIGRTGSLTPVASILPVMVDGSLLSKITLHNYDYIQKK
DIRINDFVLVHKSGSIIPEVLEVLKNKRTSQVPFKMISNCPFCNGVLTKKEGEVDHFCLN
DDCEEKKIKKIIHFVSREAMDINVLGKKTLFTFFQEGLIKKISDLYSLKDKYEQLKKLPG
FQDKKIMNILDALEQSKNQSFDRILYGLGIEHVGIKIAKLLNKKFKNINNLKKVNLEELS
EIPEIGPRISNSVIEYFRKEENIQEINLLKSKGLNFDYLYKNVPINNIFKDQKIVLTGTF
NDYSRNELTNILEKYGASIIKNVSSKTDFLIQGDNSGSKLQKARLLKIKIMDENELNNIL
NSIK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgacattagaaattaaaaaaaaaattaaaagtttgacagatacgcttcatcaagctaat
tataactattataatttgagtaaaacagatttgtcagattatcaatatgacgctttatta
aaagaattgtccgtgttagaaaaaaaatatcctgaatataaattatcttacagtcctact
ttgaaagtaggtggttttttaagttcgaagtttaaaaaagtagaacatattgttccaatg
ttgtccttgagtaatgtttttaattttgatgaattaaaattattttgtaatcgtttatta
aaaataaatattcctttttgttttattatcgaacctaagatagatggagtagcaattagt
ttaaaatatgaaaaaggtattttagtccaagctgcaacaagaggaaatggttatgttgga
gaattaataactgaaaatattagaactattaaaaatattcctttaaaaattaaagaagaa
atagatttagaagtaagaggagaaattttatttgatcatgattcatttgaaaaattgaat
aaagaacaaaaagaaaaaaataaaattttattttctaaccctcgtaatgcagcttctgga
accttaagacaattaaactcttcgatagttgctcaaagaaatttatcttcttttatttat
tctattatcgaccctcctttttttattaagacgcaaaaggaagctttagattttttaaaa
aaaaatggtttttctgttaatccttattatgatgttgttttttcctttgaacaattaaaa
gaaaaaattaattattataaagaattgaaagataaattgccttatgatatagatggaatt
gtaatcaaagtaaatgaattaattttacataattccattggatatacttctaaatgtcct
aagtgggctaccgcttataaattaaattctttaaaaggtgaaactataattcaaaatatt
gaatttcaaataggaagaactggttctttaactcctgtagcttctattttgcctgttatg
gtagatggcagtttgttgtctaaaataacgcttcataattatgattatattcaaaaaaaa
gatattcgtattaatgattttgtattagtacataaatcaggttctattattcctgaagtt
ttagaagttttaaaaaataaaagaactagtcaagttccttttaaaatgatttcaaattgc
cctttttgcaatggtgttttaactaaaaaagaaggtgaagtcgatcatttttgtttaaat
gatgattgtgaagaaaaaaaaataaaaaaaattattcattttgtttcgagagaagcgatg
gatattaatgttttagggaaaaaaactttatttactttttttcaagaaggattgatcaaa
aaaatttctgatttatattctttaaaagataaatacgaacaattaaaaaaattacctggt
tttcaagataaaaaaataatgaatattttagatgccttagaacaaagtaaaaaccaatct
tttgatagaattttatacggtttaggaattgaacatgtaggaattaaaatagctaaatta
ttaaataagaaatttaaaaacattaataatctaaaaaaagttaatttagaggaattatct
gaaattcctgaaataggtccaagaatatctaatagcgttattgagtattttcggaaagaa
gaaaatattcaagaaattaatttattaaaatctaaaggtcttaattttgattatttatat
aaaaatgttccaattaataatatattcaaagatcaaaaaatagttttaactggtactttt
aatgattattcaagaaatgaattaactaatattttagaaaaatatggagcttctattatc
aaaaatgtttcttctaaaacggattttttaattcaaggtgataatagcggttctaaatta
caaaaagctcgtttattaaaaattaaaataatggatgaaaacgaattaaataatatttta
aattcgattaaataa
DBGET
integrated database retrieval system
