Phenylobacterium zucineum: PHZ_c2309
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Entry
PHZ_c2309 CDS
T00750
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pzu
Phenylobacterium zucineum
Pathway
pzu03030
DNA replication
pzu03410
Base excision repair
pzu03420
Nucleotide excision repair
pzu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pzu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PHZ_c2309 (ligA)
03410 Base excision repair
PHZ_c2309 (ligA)
03420 Nucleotide excision repair
PHZ_c2309 (ligA)
03430 Mismatch repair
PHZ_c2309 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pzu03032
]
PHZ_c2309 (ligA)
03400 DNA repair and recombination proteins [BR:
pzu03400
]
PHZ_c2309 (ligA)
Enzymes [BR:
pzu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PHZ_c2309 (ligA)
DNA replication proteins [BR:
pzu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PHZ_c2309 (ligA)
DNA repair and recombination proteins [BR:
pzu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PHZ_c2309 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PHZ_c2309 (ligA)
MMR (mismatch excision repair)
DNA ligase
PHZ_c2309 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PHZ_c2309 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
Nlig-Ia
PTCB-BRCT
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ACG78719
UniProt:
B4RFE9
LinkDB
All DBs
Position
complement(2616252..2618330)
Genome browser
AA seq
692 aa
AA seq
DB search
MKSVESLTEAEAAEELTRLADEIAAHDIRYYREDAPTISDAAYDALRRRNDELEAAFPHL
IRENSPSLRIGAARAEQFAPVEHGVPMLSLDNAFSDADALEFDARVKRFLRLDEEVAYTA
EPKIDGLSCSIRYENGRLVRAATRGDGRVGEDVTANVRTIGEIPQKLHGQAWPEVIEIRG
EVYLGHAEFAALNEAAASAGQKTYANPRNAAAGSLRQIDPKITAQRPLRFFAYAWGFVSA
PFAQTQWEALQALKAWGFRTTPQSRCVKGAEGLMEAYREMEAERPHLGFDIDGVVYKVDR
LEWQQRLGFVSRAPRWGIARKFPAEQARTVLEAIDIQVGRTGALTPVARLTPVTVGGVVV
TNATLHNADEIARLDVRVGDTVVLQRAGDVIPQILRVIPEERPKDSVPYDFPHVCPCPLR
TEVVRETTASGAETVVRRCSGEFACPFQRINHLLHFVSRRAFDIEGLGEKQLTAFFERGW
IKAPADIFRLHEKRDELLAMERMGETSVGNLLANIEARRTIGLDRFIYGLGIRHIGETTA
TVMARGYGTAAHFLEAMDKVAARDPEAVEELDALDQIGGAVIEAAAAFFGEDHNRAMVED
LAGQLTILDAEKPKTDTAVAGKTVVFTGALERMTRDEAKAQAERLGAKVSGSVSKKTDIV
VAGPGAGSKLKTAAELGIQVLTEDEWLEMVGS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctgtcgaatccctcaccgaggccgaggccgccgaagagctgacccggctcgcc
gacgagatcgccgcgcacgacatccgctattaccgcgaggatgcgccgacgatctcggac
gcggcgtacgacgccctgcgacggcggaacgacgaactcgaggcggccttcccgcacctg
atccgcgagaactcgccgtcgctgcgcatcggcgcggccagggccgagcagttcgcgccc
gtcgagcatggcgtgccgatgctctcgctggacaacgcgttctcggacgcggacgcgctg
gagttcgacgcgcgggtgaagcgcttcctgcggctggacgaggaggtcgcctacacggcc
gagccgaagatcgacggcctgtcctgctcgatccgctacgagaacggccgcctggtgcgc
gccgcgacgcgaggcgacggccgggtgggcgaggacgtcaccgccaacgtccgcaccatc
ggggagatcccgcagaagctgcacggccaggcctggcccgaggtcatcgagatccgcggc
gaagtctacctcggccacgccgagttcgccgccctgaacgaggccgccgcctcggccggc
cagaagacctacgccaacccgcgcaacgcggcggcgggctcgctgcgccagatcgacccg
aagatcaccgcccagcgccccctgcgcttcttcgcctacgcctggggcttcgtcagcgcc
ccgttcgcccagacccagtgggaggcgctgcaggcgctgaaggcctggggcttccgcacc
acgccgcagtcccgctgcgtgaaaggcgccgagggcctcatggaggcctaccgcgagatg
gaggccgagcggccgcacctgggcttcgacatcgacggggtggtctacaaggtggaccgc
ctcgagtggcagcagcgcctgggcttcgtctcgcgcgcgccgcgctgggggatcgcccgc
aagttcccggccgaacaggcgcgcaccgtgctggaggccatcgacatccaggtgggccgc
accggcgccctgactcccgtcgcgcgcctgacgccggtgaccgtcggcggggtggtggtc
accaacgccaccttgcacaacgccgacgagatcgcgcgcctcgacgtgcgcgtcggcgac
acggtcgtgctgcagcgggccggcgacgtcatcccgcagatcctgcgcgtgatccccgag
gagcggccgaaggactccgtcccctacgacttcccgcacgtctgcccgtgcccgctccgg
accgaggtcgtccgcgagaccaccgcctcgggcgccgagaccgtggtgcgccgctgctcg
ggcgagttcgcctgcccgttccagcgcatcaatcacctgctgcacttcgtttcccgccgg
gcgttcgacattgagggcctgggcgagaagcagctcaccgccttcttcgagcgcggctgg
atcaaggcgccggccgacatcttccgcctgcacgagaagcgcgacgagctgctggccatg
gagcggatgggcgagaccagcgtgggcaacctgctggcgaacatcgaggcccgccgcacc
atcggcctggaccgcttcatctacggcctggggatccgccacatcggggagaccaccgcg
acggtgatggcgcgcggctacggcacggccgcccacttcctggaagcgatggacaaggtg
gcggcccgcgatcccgaggcggtcgaggagctggacgccctcgaccagatcggcggggcg
gtgatcgaggccgccgcggccttcttcggcgaggaccacaaccgggccatggtcgaggac
ctggcgggccagctcaccatcctcgacgccgagaagcccaagaccgacacggcggtggcc
ggcaagaccgtggtcttcaccggcgcgctggagcggatgacccgcgacgaggccaaggcc
caggccgagcggctgggggccaaggtgtcgggctcggtgtcgaagaagaccgacatcgtg
gtggccggtcccggcgcaggctcgaagctgaagacggccgccgagctcggcatccaggtg
ctcaccgaagacgaatggttggagatggtcggcagctag
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