Qipengyuania aurantiaca: K3148_13195
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Entry
K3148_13195 CDS
T09825
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
qar
Qipengyuania aurantiaca
Pathway
qar03030
DNA replication
qar03410
Base excision repair
qar03420
Nucleotide excision repair
qar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
qar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K3148_13195 (ligA)
03410 Base excision repair
K3148_13195 (ligA)
03420 Nucleotide excision repair
K3148_13195 (ligA)
03430 Mismatch repair
K3148_13195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
qar03032
]
K3148_13195 (ligA)
03400 DNA repair and recombination proteins [BR:
qar03400
]
K3148_13195 (ligA)
Enzymes [BR:
qar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K3148_13195 (ligA)
DNA replication proteins [BR:
qar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K3148_13195 (ligA)
DNA repair and recombination proteins [BR:
qar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K3148_13195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K3148_13195 (ligA)
MMR (mismatch excision repair)
DNA ligase
K3148_13195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K3148_13195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QZD89738
LinkDB
All DBs
Position
complement(2705590..2707662)
Genome browser
AA seq
690 aa
AA seq
DB search
MPASKPVDMTEAEAANELMRLARAIAKHNKLYHAEDAPEITDQEFDALVRRNAELEAQFP
HLVREDSPSKVVGHEIAASPLSKVTHEVRMMSLDNAFSGEEVAEWVARVRRFLSLDEGEP
VAITAEDKIDGLSCSLRYENGRLVRAATRGDGQVGEDVTPNVAHIADIPQQLSGDVPEVF
EIRGEVYMAKADFHALNAAQEEAGGKLFANPRNAAAGSLRQKDASVTAKRPLKFWAHGWG
AASDVPGATQEEVVRRIESWGVPVSPLFTRVHDVEGMLAHYAKIAKERPDLPYEIDGVVY
KVDRLDYQQRLGFVAKAPRWALAHKFPAEQAETTLEAIDIQVGRTGKLTPVGRLAPVLVG
GVTVTNVTLHNRDEIARLGVRPGDRVVVQRAGDVIPQLVDNLTREAEREPFAFPDHCPEC
GSEAVAEEGEVDVRCTGGLICPAQRTERLKHFVSRGALDIDGLGEKTIDQFFALGWLESP
ADIFRLHQRRDAILALEGWQERSVDKLVDSIEARRAPDAARLLFGLGIRHVGAVTARDLM
KHFHELPALRQAAEAARAGVEEAAASLTSIDGIGGAVVEALGDFFHEDHNKAVWDDILSE
VSPPPYIVETKESPVSGKTVVFTGKLETMSRDEAKAQAERLGAKASGSVSAKTDLLVAGP
GAGSKLKKAADLGIEVIDEAGWAKIVAEAG
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgagcaagcctgtggacatgaccgaagccgaagccgccaacgaattgatgcgt
ctcgcgcgggcgattgcgaagcataacaagctctatcacgccgaggacgcgccggagatc
accgatcaggagttcgatgcgctagtgcggcgcaatgcggagctggaggcgcaattcccg
catctggtgcgcgaggactcgccctccaaggtcgtgggccacgagattgccgcctcgccg
ctgtccaaggtcacgcacgaagtccgcatgatgagcctcgacaacgccttttcgggcgag
gaagtcgcggaatgggtggcgcgtgtgcggcgcttcctgtcgctggacgagggcgagccg
gtcgctatcaccgccgaggacaagatcgacggtctttcctgctcgctgcgctacgagaac
ggcaggctggtacgcgccgccacgcgcggggatgggcaggtgggcgaggatgtcacgccc
aatgtcgcgcatatcgccgacatcccgcagcagctttccggtgacgtgccggaggtcttc
gagatccgcggcgaggtctatatggccaaggccgacttccacgcgctcaacgcggcacag
gaggaagcgggcggcaagctcttcgccaacccgcgaaacgcagcggccggttcgctgcgc
cagaaggatgccagcgtgacggcaaagcgtccgctcaagttctgggcccacggctggggc
gcggcgtccgatgtgccgggcgctacgcaggaagaggtcgtgcgccggatcgagagctgg
ggtgtgccggtttcgccgctgttcacgcgcgtgcatgacgtcgagggtatgctcgcacat
tatgcaaaaatcgcgaaggaacgtcctgaccttccttatgaaatcgacggtgtggtctac
aaggtcgaccggctcgactatcagcagcggcttggcttcgtcgccaaggcaccgcgctgg
gcgttggcgcacaagttcccggctgaacaggccgagaccacgcttgaggcgatcgacatc
caggtcgggcgcacgggcaagctgaccccggtggggcgtcttgccccggtgctggtcggc
ggggtgaccgtcaccaatgtcacgctccacaaccgggacgagatcgcgcggctcggcgtg
cgaccgggtgaccgcgtggtggtccagcgcgcgggcgacgttattccacagcttgtggat
aacctcacccgcgaggcggagcgcgaacccttcgccttccccgatcactgccccgaatgc
ggcagcgaagccgtggcggaggagggcgaggtcgatgtgcgctgcacaggcgggctcata
tgtcccgcgcaacgcacggaaagattgaagcatttcgtcagccgcggcgcgctcgatatc
gacgggctgggcgaaaagaccatcgaccagtttttcgcgctgggatggctcgaaagcccc
gccgatatcttccgactgcaccagcgtcgcgacgccatcctcgcgctcgaaggatggcag
gagcggtctgtggataagcttgtggacagcatcgaggcgcgccgggcccccgatgccgcg
cgcctgctgttcggtctcggcatccgccatgtcggcgccgtgacggcacgcgatttgatg
aagcatttccacgagcttcccgcgttgcgccaagcggccgaagccgcgcgtgccggggtc
gaggaggcggccgcttcgctgacctcgatcgacgggatcggcggcgcggttgtggaggcg
ctgggtgatttcttccacgaggaccacaacaaggccgtgtgggacgacatcctctccgaa
gtctcgcctccgccctacatcgtggaaacgaaggaaagcccggtaagcggcaagacggtg
gtcttcaccggcaagctggaaaccatgagccgcgacgaggccaaggcgcaggccgaacgc
ctcggcgcgaaggccagcggatcggtcagcgccaagaccgacctgctcgtcgccgggccg
ggcgcgggcagcaagctcaagaaggccgccgacctcgggatcgaggtgatcgacgaggcg
ggctgggcgaaaatcgtggcggaggcgggctga
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