Quatrionicoccus australiensis: KI612_12195
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Entry
KI612_12195 CDS
T07598
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
qau
Quatrionicoccus australiensis
Pathway
qau03030
DNA replication
qau03410
Base excision repair
qau03420
Nucleotide excision repair
qau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
qau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KI612_12195 (ligA)
03410 Base excision repair
KI612_12195 (ligA)
03420 Nucleotide excision repair
KI612_12195 (ligA)
03430 Mismatch repair
KI612_12195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
qau03032
]
KI612_12195 (ligA)
03400 DNA repair and recombination proteins [BR:
qau03400
]
KI612_12195 (ligA)
Enzymes [BR:
qau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KI612_12195 (ligA)
DNA replication proteins [BR:
qau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KI612_12195 (ligA)
DNA repair and recombination proteins [BR:
qau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KI612_12195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KI612_12195 (ligA)
MMR (mismatch excision repair)
DNA ligase
KI612_12195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KI612_12195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UCV13716
LinkDB
All DBs
Position
complement(2505422..2507788)
Genome browser
AA seq
788 aa
AA seq
DB search
MAGAVETQRAAELRAELERHNQAYYVHDNPSIPDAEYDKLFRELQGLEQQYPELLTADSP
TQRVGAAPLKEFPPRQHGVPMLSLNNAFAEAEVEAFDQRVRDGLHSIATVDYAVEPKFDG
LAISLTYENGVFTCGATRGDGMTGEEVTPNLRTLRGIPLRLAGEGWPALIEVRGEVLMFK
ADFAKLNERQRENGDKEFANPRNAAAGSLRQLDSKITAGRPLSFFAYGVGLGADAVDAAT
HAELMDRLAAWGFPVAAERDVVHGSRGLLDYFVRIGAQRPSLPYDIDGVVYKVNSLAAQE
ELGFVSRAPRFAIAHKFPAEEALTVVEAIDIQVGRTGALTPVARLAPVFVGGVTVTNATL
HNEDELRRKDVHVGDTVVVRRAGDVIPEVVSVVAERRPATAQPFVMPDACPVCGAHVVRE
PGEAVTRCSGGFSCRAQRIQAILHFAGRRMLDIDGLGERYVERLVEFDYVHGIADLYRLK
LDDLLEMKRRADEKDGTVPETVKAGQTPTRWAENLLAGIAASRRPSLARLLFALGIRHVG
ESTAKTLADWLGSVERVRRAPAPLLAVLPDIGATVAAAIADFFAEERNVQAVDELLCPEI
GVAPADEHAPRPGLAERLGWAELYAVLGVPRLTPVRAKQLAAVVDGATLATQGINAAALS
GAGIPGEVITALGEWLQARGNRGLLAAVATRRDELLAALPAVGAQDVAAAPLLGKTFVLT
GTLPTLKRDEAKAMIETAGGKVAGSVSKKTDYVLAGEEAGSKLEKAQELGVAVLDETEFL
LLLEKGVE
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggccggtgcggtcgagacgcagcgcgcggcagagctgcgcgccgagcttgagcgtcat
aaccaggcttattacgtccacgacaatccgagcattccggatgccgagtacgacaagctg
tttcgtgagctgcaggggctcgagcagcaatatcccgaactgctgacggccgattcgccg
acgcagcgggtgggggcggcgccgctcaaggaattcccgccgcgccagcacggcgtgccc
atgctctcgctcaacaatgccttcgccgaagccgaggtcgaggccttcgaccagcgcgtg
cgcgacggcctgcacagcatcgccacggtcgactatgccgtggagccgaaattcgatggc
ctggcgatcagcctgacctacgaaaacggcgtgttcacctgcggcgccacgcgcggcgac
gggatgaccggcgaggaagtgacgcccaatctgcgcaccctgcgcggcattccgttgcgt
ctggcaggcgaaggctggccggcgctgatcgaagtccgcggcgaagtgctgatgttcaag
gccgatttcgccaaactcaacgaacgccagcgcgagaacggcgacaaggagtttgccaat
ccgcgcaatgccgccgccggcagcctgcgccagctcgattcgaaaatcaccgccggccgg
ccgctgtccttcttcgcctatggcgtcggtctgggcgccgatgcggtcgacgccgcaacg
catgccgaattgatggacaggctggccgcctgggggtttccggtggccgccgagcgtgac
gtcgtgcacggtagtcgcggcctgctcgattattttgtccggatcggcgcgcaacgcccg
agcctgccctacgacattgacggcgtggtctacaaggtcaattcgctggcggcgcaggag
gagctcggctttgtttcacgcgcgccgcgctttgccattgcccacaaattcccggccgaa
gaggccttgaccgtggtcgaggcgatcgacatccaggtcggccgtaccggcgcactgacc
ccggtcgcccgtctggcgccggtcttcgtcggcggcgtcacggtgaccaacgcgacgctg
cacaatgaagacgaactgcgccgcaaggacgttcacgtcggtgacacggtggtggtgcgc
cgcgccggcgacgtcattcccgaggtggtcagcgtcgttgccgaacgccggccggccacc
gcccagcctttcgtcatgcccgacgcctgcccggtgtgcggcgcgcacgtcgtgcgcgag
ccgggcgaggcggtgacgcgctgttccggcggtttttcctgccgggcgcagcgcattcag
gccatcctgcattttgccgggcgccggatgctggatatcgacggtctgggcgagcgctac
gtcgagcgcctggttgaattcgattatgtgcatggcatcgccgatctgtatcgtctcaag
ctcgacgacctgctggaaatgaagcggcgtgccgacgagaaggatggaacggtgccggaa
acggtcaaggccggccagacgccgacgcgctgggctgagaacctgctcgccggcatcgcc
gccagccgccggcccagtctggcccgcctgcttttcgcgctgggcatccgccatgtcggc
gaaagcacggccaagaccctggccgactggctgggcagtgtcgagcgcgtgcggcgtgcg
ccggcgcccttgcttgccgtgctgcccgacatcggcgccacggtggcggcggcgattgcc
gatttctttgccgaagaacgcaatgtccaggcggtcgacgagctgttgtgcccggaaatc
ggcgtcgcgccggccgacgagcatgcgccgcggcccggtctggccgaacgcctgggctgg
gccgaactctatgccgtgctcggcgtgccgcgcctgacgccggtgcgcgccaaacagctc
gccgccgttgtcgacggtgcgacgctggcgacgcaggggatcaatgcggcggcgctgtcc
ggcgccggcattcccggcgaggtcatcacggcgctcggcgagtggttgcaggcgcgcggc
aatcgtggtctgctggctgctgtggcgacgcggcgtgacgaactgctggcggcgctgccg
gcggtcggcgcgcaggatgtcgcagcggcaccgctgctcggcaagaccttcgtgctgacc
ggtacgctgccgaccctgaagcgcgacgaagccaaggcgatgatcgaaaccgccggcggc
aaggtggctggctcggtgtcgaagaagacggattacgtgttggccggcgaagaagccggc
tccaagctggaaaaggcgcaggaactgggtgttgctgtgctcgatgaaacagaatttttg
ctattgctcgaaaagggagtcgaataa
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integrated database retrieval system
