Qipengyuania citrea: NCF85_07145
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Entry
NCF85_07145 CDS
T08274
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
qci
Qipengyuania citrea
Pathway
qci03030
DNA replication
qci03410
Base excision repair
qci03420
Nucleotide excision repair
qci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
qci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCF85_07145 (ligA)
03410 Base excision repair
NCF85_07145 (ligA)
03420 Nucleotide excision repair
NCF85_07145 (ligA)
03430 Mismatch repair
NCF85_07145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
qci03032
]
NCF85_07145 (ligA)
03400 DNA repair and recombination proteins [BR:
qci03400
]
NCF85_07145 (ligA)
Enzymes [BR:
qci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCF85_07145 (ligA)
DNA replication proteins [BR:
qci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCF85_07145 (ligA)
DNA repair and recombination proteins [BR:
qci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCF85_07145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCF85_07145 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCF85_07145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCF85_07145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
USA62740
UniProt:
A0ABY4U9J5
LinkDB
All DBs
Position
complement(1486425..1488485)
Genome browser
AA seq
686 aa
AA seq
DB search
MTPDLTEADAANELMRLAKQIAHHDRLYHAEDAPEITDQEYDALVRRNAELEAAFPQLVR
EDSPSRKVGHAIASSPLSKVKHEVRMMSLDNAFSAEEVEEWVARVRRFLSLADDAPLAFT
AEDKIDGLSCSLRYEKGVLVRAATRGDGQVGEDVTPNVAFIPDIPQSIAGEVPDVFEVRG
EVYMAKADFLALNAAQEEVGGKLFANPRNAAAGSLRQKDATVTAKRPLKFWAHGWGAASA
VPGATQQQVVDALREWGFPVSALFRRVEDTQGLLGSYEAIGEARPELPYEIDGVVYKLDR
LDYQQRLGFVAKAPRWALAHKFPAERAETTLENIDIQVGRTGKLTPVGRLAPVLVGGVTV
TNVTLHNRDEIERLGVRPGDRVVVQRAGDVIPQLVDNLTRDEKRTPFTFPDRCPECDSEA
VAEEGEVDVRCTGGLICPAQRTERLKHFVSRGALDIDGLGEKTIDQFFALGWLESPADIF
RLKDRRADILALDGWKERSVDNLLASVEARREPDAARLLFGLGIRHVGSVTARDLMKNFH
ELPALRSTAEKAHAGDEDALASLVSIDGIGSAVVEALGDFFHEDHNKAVWEDILLQVAPP
RYVVETRDSPVNGKTVVFTGKLETMSRDEAKAQAERLGAKASGSVSAKTDLLVAGPGAGS
KLKKAADLGIEVIDEAAWADIVKAAE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgacgccagacctcaccgaggccgatgccgcaaacgagttgatgcggctggccaagcag
attgcgcatcatgatcgcctctaccatgccgaggacgcgcctgagataaccgatcaggaa
tacgatgcgctggtgcggcgcaatgccgaactggaggccgcatttccgcagttggtgcgg
gaggattctccgagccgcaaggtcggccatgccatcgcttcctcgccgctttccaaagta
aaacatgaggttcgcatgatgagcctcgataatgccttcagtgctgaagaggttgaagag
tgggtagcgcgcgttcgtcgattcctgtcgcttgcggacgacgcgccgctggcgttcacg
gcggaggacaagatcgacggcctgtcatgctcgctccgttacgagaaaggcgttctggtt
cgcgcggccacccgcggcgacggtcaggtgggggaagacgtgacccccaatgttgccttc
attccagacattccccaatcgattgccggcgaagtacccgacgtcttcgaggtccgcggt
gaagtctacatggcgaaggccgatttccttgccctcaatgcggcgcaggaagaagtaggc
ggcaagcttttcgccaacccgcgcaatgctgcggccggctcgctacggcaaaaggatgct
accgttacggcaaagcgcccgctgaagttctgggcgcatggctggggcgcagcgtcggct
gtgccgggagcgacgcaacagcaagtggtcgacgcattacgcgaatggggtttcccggta
tctgcactgtttcgccgcgtggaggatacgcaaggactactgggcagttatgaggccatc
ggcgaagcgcgacctgaacttccgtatgaaatcgatggcgtcgtctacaagttggaccgg
ctagattaccagcagcggctcggctttgttgcgaaagccccgcgctgggcgctggcacat
aagtttcctgccgaacgggcggagaccacgctggaaaacatcgatattcaggtcggacgc
accggcaagctgacaccggtcgggcgtcttgcaccggtattggttggcggcgtgacggtt
accaatgtcacgcttcacaatcgcgacgagatcgagcgcctgggcgtacgtcccggcgac
cgcgtggtcgtgcagcgtgcaggagacgttattccacagcttgtggataatctgacccgg
gacgaaaagcgcacaccgttcacatttcccgaccgctgccccgagtgtgacagcgaggcg
gtggcggaagaaggtgaagtcgacgtgcgctgcaccggcggccttatctgtcctgcgcaa
cgtacggaaagattgaaacactttgtcagtcgtggggcgctcgacatcgacgggctgggc
gaaaagactatcgatcagttctttgcacttggctggctggaaagcccggccgacatcttc
cggctgaaggaccgccgcgccgatattctagcgctcgacggctggaaggagcggtctgtg
gacaacctgttggcttctgtggaagcccgcagggagcccgatgccgcgcgcctgttgttt
ggactgggaattcgccacgtcgggtcggtgaccgcgcgcgatctgatgaagaactttcac
gaattgcccgcgctgcgcagtacggcggagaaggctcatgcgggtgatgaggacgcgctg
gcttcgctcgtttccatcgatggtatcggcagtgcggttgtcgaggcgctcggcgatttt
ttccatgaagatcataacaaggcggtgtgggaagacatactcttgcaagtggcgccgcct
cgctatgtcgtcgaaacccgggatagtccggtcaacggcaagacagttgtctttaccggg
aaactggaaaccatgagccgggatgaggcaaaggcacaggccgaacgtcttggagccaag
gccagcggatcggtcagtgcaaagaccgacctgctcgtggctggcccgggcgcgggcagt
aagctcaaaaaggccgctgaccttggtatcgaagtgatcgacgaggcggcgtgggccgac
atcgtcaaggcggccgagtag
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