Quercus lobata (valley oak): 115955945
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Entry
115955945 CDS
T07350
Name
(RefSeq) DNA repair protein RAD16
KO
K15083
DNA repair protein RAD16
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115955945
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
115955945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
DEAD
zf-RING_2
RING_XB3-XBAT31
zf-C3HC4_4
zf-RING_6
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
115955945
NCBI-ProteinID:
XP_030930224
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All DBs
Position
8:complement(32651488..32665997)
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AA seq
934 aa
AA seq
DB search
MELRSRRQISNPPIDEASNVQVQEISDDSTDEAGSDSTVYVPSGSDHSDEDVDEEDSGRV
EFDLNATPKAAVEVDDWEDNGYDYGKPSTKRKKAGQEKKTVEHGESSRVADVDAQQAAVE
IDFLGLAKNDNNNIIIYNFNNNNNNNNNNSNKKRKRKGGPKPRLLWNEWEEEHEKWIDEN
ITKDFDLECQDQEITETAEEPSELIMPLLRYQKEWLAWASKQEEKSGIRGGILADEMGMG
KTIQAISLVLARREIRRTTDDDTSVLPGSSKGLPGIKATLVICPVVAVKQWESEIKRFTS
EGCAKVLIYHGANRAKHSKEIRKCDFVLTTYSVVEAEFRKYMMPPKTKCPYCGKAYYESK
LTIHLKYFCGPDAVRTEKQSKQARKKWSPAMSKQKTESAEDVMDESDGKKSKGARQKASK
QHNEEDDMGMGSRFGNGGVDSSSRGKSLLHAVKWERVILDEAHYIKARHCNTAKAVLALD
SSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYLCKDCDCKTLDHSSLKECQNCHHSSV
RHFCWWNKYVATPIQSYGKSDEGRRAMILLKHKILKNIVLRRTKKGRAADLALPPRVVLL
RRDTLDIKEQDYYESLYNDSQSQFNTYVQSGTVMNNYAHIFDLLTRLRQAVDHPYLVVCS
KAAALRRENMISNDNSEQVCGICHDPAEDPAVTSCEHVFCKACLLNYCASFGQASCPTCS
KLLTVDLTKNVDNEDQTSKTTIKGFRSSSILNRIQLDDFQTSTKIEALREEIRFMVERDG
SAKGIVFSQFTSFLDLINYSLHKSGIKCVQLVGSMTMSARDASIKRFTEDPDCRIFLMSL
KAGGVALNLAVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILK
LQEKKELVFEGTIGGSTEALGKLTEEDLRFLFVT
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggagcttcgttctcgtaggcaaatctctaaccctcctatcgatgaagcaagcaatgtg
caagttcaagagattagtgatgatagcactgacgaagcgggttctgactcaacagtctat
gtgccctccggttctgatcatagtgatgaagatgtagatgaagaggacagcggtagagtg
gagtttgatttgaacgccacaccaaaagctgcagttgaggttgatgattgggaagataat
ggttatgattatggtaagccttcaacgaaaaggaagaaggctggacaagagaagaaaaca
gtggagcatggagagtctagtcgggtagcggatgtggatgctcagcaagcagcagttgag
attgattttcttgggttggccaagaatgataataacaacattattatttataattttaat
aataataataataataataataataatagtaataaaaagaggaaaagaaaaggaggtcca
aagccaagattgttgtggaatgaatgggaagaagaacatgagaaatggattgatgagaat
ataacaaaagattttgatttggaatgtcaggatcaagagataactgaaactgctgaggaa
ccatccgaattgataatgcctttgttaaggtaccaaaaggagtggttggcctgggcttca
aaacaggaggaaaagtctggaattagagggggaatacttgctgatgaaatgggaatggga
aaaaccattcaagcaatttcactcgtccttgccaggcgggaaatccgaagaacgactgat
gatgatacctcagtattaccaggttcatccaaaggcttgcctggaattaaggccaccctt
gtaatttgtcctgtggttgctgtaaagcagtgggagagtgagattaaacggtttacttca
gagggttgtgccaaggtgcttatttatcatggggccaatagagcgaagcattctaaagag
attagaaaatgtgattttgttctaacaacatactctgttgttgaggctgagttcagaaaa
tacatgatgcctcccaagacgaagtgtccttactgtggcaaagcatattatgaaagtaag
cttacgattcacctgaaatatttttgtgggcctgatgctgttagaacagagaagcagtct
aagcaagcaaggaagaaatggagccctgcaatgtcaaagcagaaaacagagtctgctgaa
gatgtgatggatgaaagtgatggcaagaaaagtaagggagctcgtcagaaggcatcaaag
cagcacaatgaagaagacgacatgggaatgggaagtagatttggaaatggaggagttgac
agctcttcaagagggaaatcacttttgcatgctgtgaagtgggagcgtgtaattttggat
gaggcacattatataaaagctagacattgtaatactgcaaaagccgttcttgctttggat
tcttcatacaaatgggctttaagtggcactccccttcagaatcgtgttggagaactttac
tctttggttcgcttcctgcaaataactccatactcttattatctgtgcaaggactgtgat
tgcaaaacacttgatcacagctccttaaaggaatgtcagaactgtcatcatagttctgtg
agacatttttgttggtggaataaatatgttgctacaccaatacaatcatatggaaagagt
gatgaggggcgacgagcaatgattttgctcaaacacaaaattttaaagaacatagttcta
agacgcacaaaaaaaggcagggctgctgatctggcacttcctcctagagttgttttattg
aggcgggataccttggatatcaaagaacaagattattatgaatcattgtacaatgacagt
cagtcacagtttaatacatatgttcaatcgggaactgtgatgaataattacgctcacatt
tttgacctcctcacaaggttgcggcaggcagttgatcatccttaccttgtggtatgttct
aaagctgctgcattaagaagagaaaacatgattagtaatgataatagtgaacaagtgtgt
ggcatctgtcacgacccagctgaagatcctgctgtcacctcttgtgagcatgttttttgt
aaggcttgtttgcttaattactgtgcttcatttggacaagcctcatgccctacatgttcc
aaattacttactgtcgatttgactaaaaatgtggacaatgaagatcagacttctaaaact
accattaagggtttcagatcctcaagtattctgaacagaattcaacttgacgattttcag
acaagcacaaaaatagaggctttgagggaagaaattaggttcatggttgaaagggatggt
tctgcaaaaggaattgttttcagccagttcacgtcattcttggatctcataaattattcc
ctccacaagtctggtataaagtgtgttcaactagttggaagcatgaccatgtctgcaaga
gatgcctctatcaagagatttactgaggacccagattgcaggattttccttatgagcttg
aaagctggtggtgtcgctctgaatcttgcagttgcatcacatgtctttttgatggatcct
tggtggaacccagctgtggagcggcaagcacaagatagaatccatcgaatagggcagtat
aaaccaatcagaattgtgagatttgttattgagaatacaattgaagagaggattttgaag
ctacaagaaaagaaggaactagtgtttgaagggactataggtggctctacagaggccctt
ggaaaattgactgaggaagacttgagatttctttttgtcacctga
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