Quercus lobata (valley oak): 115959132
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Entry
115959132 CDS
T07350
Name
(RefSeq) 5'-3' exoribonuclease 2-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
115959132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115959132
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
115959132
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
115959132
NCBI-ProteinID:
XP_030933295
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All DBs
Position
9:complement(26655948..26683215)
Genome browser
AA seq
1516 aa
AA seq
DB search
MGIPSFYRWLLDRYPRTVVDAIEEEPPDATKPNPNGKEFDNLYLDMNGIVHPCFHPEGLP
PPKSYDDIFAAVFSYVDRVFSIVRPRKLLFLAIDGVAPRAKMNQQRSRRFRAAKDAAAEA
ASREKTFESEEEKAAYLEQCKKMDSNVITPGTEFMALLSSALRYYIHLRMNKDPGWRGVK
VILSDANVPGEGEHKIMSYIRLQRNLPGYDVNTRHCLYGLDADLIMLALATHELHFFILR
EDVRGARSNDKHQQENMKKSKEMEVEGENLEGFISRQKFQFLNILILREYLQLDMTIRAK
KKSSKKSIFTKKGKKKLKLERLIDDFVFMCLFVGNDFLPHIPSLEISEGAIDLLMMVYKK
EFRKMGGYLTDSFKVNLKRVEHFVQVLASHECAIFRRRRQMQKERGLRYRRFSNKKNTRS
SSNLISQNHRNSSSVETQTPINLSSVGTNAVVDEIKLGETKGWKERFYAEKFEVETKDVE
KIRRHAVSKYIEGICWVMHYYYEGVCSWQWFYPYHYAPFASDFSGVDQLKIEFTLGKPFK
PFDQLLSVLPAASAHALPLFYRKLMTDMSSPLSDFYPTDFELDMNGKHFSWQAVCKLPFI
DESRLLSEISKVEHTLTDEERCRNSFSLDVLFVHASHPLTVKILAFCQRKAVHPKFAGTK
VKRKINPKFSDGMNGYMYISDKPVQPVEILSPIEDMEIISNNEVLSVFFKCPPFHSHITS
ISKGVKVPRMSVRKKDILPPPVLWHKKSAVLGRIHSERSIPKSISGHLLAKLARKLLSKC
YPPRKKWGSMELGDNIGVDGFISRLNLIDTVPQGGAGFYKNCIYCDNGAPDEQVGETGAN
GLECGRVPITNHVNCETLIRSLKPKRSKAIRAMDLEPSIFELAAEAEKNRVNHEVPYTHV
GETGTNRVVCAQNLEPTIFELVAATDKNCVDGVPDNQVGANEASGLVYASGVPDNCVDVK
SKKKKRKQSKAGGAQNLGPTSCEVGTGAEKNCVNHEVPDTHVGETGTNRVVCAQNLEPTI
FELAAAADKNCVDGVPDNHVGANEANGLVCASGVLDNCVDVKSKKKKRKRSKAGGAQNLG
PTSCEVDMEAEKNCVNHEVPDTHVGETGTNRVVCAQNLEPTIFELAAAADKNCVDGVPDN
QEREAEENCVNHEVPDTHVGETGTNRVVCTQNLEPTIFDLAAAADKNCVDGVPDNQVGVN
GENGLICASGVPDNCVDVEPKKKKRKRSKAGGAQNLGPTSCEVGMGAEKNCVNGVPDSQV
GANEANGLVCASGVLDNCVDVKQSKAGGAQNLGPTSCEVGMGAEKNCVNHEVPDTHVSET
GTNSVVCAQNLEPTNFEVGTAADKNCVDNRDPDKHVGETGANGLVHASGVPDKNCVNVKS
KKRKPKGSKVRGAQNLELTICEAGTGANLNCVDNRVQDKHVGDSVSNGLICPSGVLDKNC
VDGKSKKKRQKRCTVGGAENLEPAICELETGANEIFVDNGLQDHHVGETGAKALEYSDGV
QNNNVGENGANVLAFG
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
atgggaataccttcattttacagatggcttttggacaggtacccgcggacggtggtggac
gccatcgaagaagaaccgccggacgccaccaagccgaacccaaacggcaaggaattcgac
aacctctacctcgacatgaacggcatcgtccatccctgcttccaccccgaaggcctgccg
cctcccaaaagctacgacgacattttcgccgccgtcttcagctacgtcgaccgcgtcttc
tccatcgtcaggccccgcaaactcctcttcctagcaatcgatggtgtagcgccgcgagct
aagatgaatcagcaacgttctaggcgttttcgggcagctaaggatgcagctgctgaagct
gcttcaagagagaagacatttgaatctgaagaagaaaaggcagcgtatttggagcagtgt
aagaagatggactcaaatgtgatcacacccggaactgaattcatggcattgttgtcatcg
gctcttcgttattatatacatttgcggatgaataaagatcctgggtggcggggagttaag
gtcattctttctgatgccaatgttcccggtgaaggggagcataagataatgtcttacatt
cgattacaaagaaatcttccgggatatgatgtaaacaccaggcattgtctgtatggattg
gatgcggatcttatcatgcttgcactagctacccacgaattgcatttctttattctgaga
gaggatgtccgtggagcaagatcaaatgataaacatcagcaagaaaatatgaaaaagtca
aaggaaatggaagtggagggcgaaaatcttgaaggttttatctcaaggcagaaatttcag
tttctcaacatattgattctcagggagtatttacaacttgacatgaccatccgggcaaaa
aagaagtcctcaaaaaagtccatatttaccaaaaaagggaagaagaagttgaaattagaa
cgcttgattgatgattttgtcttcatgtgcttgtttgttggaaatgactttcttccccac
attccttcattggaaatatctgagggggctatcgatctgctcatgatggtttacaaaaag
gaatttcgcaaaatgggaggttacctcacagattcttttaaggtaaacttgaaacgtgtg
gagcactttgtccaggttttggcatctcatgaatgtgcaatttttagaagacgacgccag
atgcagaaggaaagaggactccgctatcgacgattttcaaataagaagaatacccgttct
tcaagtaaccttataagtcaaaatcatcgtaattcaagttctgttgaaactcaaacacca
atcaacttgtcatccgttggcacaaatgcagttgtggatgagattaagctgggggaaaca
aagggttggaaggaaagattttatgctgaaaagtttgaggttgaaactaaagatgtcgag
aaaattcggagacatgcggtttctaaatatattgaagggatatgttgggtcatgcattac
tactacgaaggagtatgctcctggcaatggttttacccatatcattatgccccgtttgct
tcagactttagtggtgttgatcaattaaaaattgaattcacattagggaaacctttcaag
ccatttgatcagttgttgagtgtattgcctgctgcaagtgcacatgctcttcctttgttt
tacaggaagctgatgacagatatgtcatcacctttatcagatttttaccctactgatttt
gagcttgatatgaatgggaaacacttttcttggcaggctgtttgtaagttaccatttatt
gatgagtcacgccttctttcggagatttcaaaagtggagcatacattgacggatgaagaa
agatgcagaaatagtttcagtctggatgtactgtttgttcatgcttcacatcctttaaca
gtgaagatacttgctttctgtcagagaaaagctgttcatccaaagtttgctggcactaaa
gttaagcgaaaaattaatccaaaattcagtgatggaatgaatgggtacatgtatatttcc
gataagcctgtgcagcctgtagaaatcctttcaccaattgaggacatggagattatttct
aataatgaagtattatcagtcttcttcaaatgcccaccattccattctcacatcactagt
atatcaaaaggagtaaaagtgcctcgcatgtctgtcaggaagaaggacattttacctcca
cctgttttgtggcataagaagtcagctgtccttggacgcatacattctgaaaggtccatc
cctaagtcaatctcaggtcatcttctagcaaaattagctcgtaaacttctatctaaatgt
taccctccgagaaagaagtgggggtctatggaactgggtgacaacataggtgtggatgga
ttcatatcccgtttgaatttgattgatactgttccacagggtggggctggattttataaa
aactgcatttattgtgataatggagctccagatgaacaagttggtgagactggagcaaat
ggtttggagtgtggcagagtaccaattacaaatcatgttaattgcgaaacactgattcga
agtttgaaaccgaaacggagcaaagccatacgtgcaatggatttggagccatcaattttt
gagttagctgctgaagctgaaaaaaatagggttaatcatgaagtcccatatacacatgtt
ggtgagacaggcacaaatagagtggtatgtgcacaaaatttggagccaacaatttttgag
ttagtggctgcaactgataaaaattgtgttgatggagtcccagataatcaagttggtgcg
aatgaggcaagtggattggtatatgctagtggagttccagataattgtgttgatgtcaaa
tctaaaaaaaagaaacggaaacagagcaaagccggaggtgcacagaatttggggccaaca
agttgtgaggtagggacaggagctgaaaaaaattgtgttaatcatgaagtcccagataca
catgtcggtgagacaggcacaaatagagtggtatgtgcacagaatttggagccaacaatt
tttgagttagcggctgcagctgataaaaattgtgttgatggagtcccagataatcatgtt
ggtgcgaatgaggcaaatggattggtatgtgctagtggagttctagataattgtgttgat
gtcaaatctaagaaaaagaaacggaaacggagcaaagccggaggtgcacagaatttgggg
ccaacaagttgtgaggtagatatggaagctgaaaaaaattgtgttaatcatgaagtccca
gatacacatgtcggtgagacgggcacaaatagagtggtatgtgcacagaatttggagcca
acaatttttgagttagcagctgcagctgataaaaattgtgttgatggagtcccagataat
caagagagggaagctgaagaaaattgtgttaatcatgaagtcccagatacacatgtcggt
gagacaggcacaaatagagtggtatgtacacagaatttggagccaacaatttttgactta
gcggctgcagctgataaaaattgtgttgatggagtcccagataatcaagttggtgtgaat
ggggaaaatggattgatatgtgctagtggagttccagataattgtgttgatgtcgaacct
aagaaaaagaaacggaaacggagcaaagctggaggtgcacagaatttggggccaacaagt
tgtgaggtagggatgggagctgaaaaaaattgtgttaatggagtcccagatagtcaagta
ggtgcgaatgaggcaaatggattggtatgtgctagtggagttctagataattgtgttgat
gtcaaacagagcaaagccggaggtgcacagaatttggggccaacaagttgcgaggtaggg
atgggagctgaaaaaaattgtgttaatcatgaagtcccagatacacatgtcagtgagaca
ggcacaaatagtgtggtatgtgcacagaatttggagccaacaaattttgaagtagggact
gcagctgataaaaattgtgttgataacagagacccagataagcatgtgggtgagactggg
gcaaatggattggtacatgctagtggagttccagataaaaattgtgttaatgttaaatct
aagaaaaggaaaccgaaagggagcaaagtgagaggtgcacagaatttggagctaacaatt
tgtgaggcaggtactggagccaatttaaattgtgttgataaccgagtccaagataagcat
gttggtgatagcgtatcaaatggattgatatgtcctagtggtgttttggataaaaattgt
gttgatggaaaatctaagaaaaagagacagaaacggtgcacagtggggggtgcagagaat
ttggagccagcaatttgcgagttagaaactggagccaatgaaatttttgttgataatggt
ctccaagatcaccatgttggtgagactggagcaaaagcattggaatattctgacggagtc
caaaataacaatgttggtgagaatggagcaaatgtattggcctttggttaa
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