Quercus lobata (valley oak): 115960301
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Entry
115960301 CDS
T07350
Name
(RefSeq) ABC transporter I family member 21-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115960301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115960301
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115960301
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
SMC_N
ORC-CDC6-like
AAA_15
AAA_28
AAA
AAA_23
NACHT
AAA_5
AAA_22
AAA_18
AAA_30
Zeta_toxin
AAA_25
SRP54
PduV-EutP
AAA_33
Arf
AAA_24
AAA_16
Motif
Other DBs
NCBI-GeneID:
115960301
NCBI-ProteinID:
XP_030934981
UniProt:
A0A7N2MKL3
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Position
9:39671682..39676005
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AA seq
289 aa
AA seq
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MADGGEENNSIRVCGMQFSYEGQPPIFADFNLNIQPGSRCLLVGANGSGKTTLLKILAGK
HMVGGRDVVRVLNRSAFHDTQLVCDGDLSYLGGTWSKTIGSAGEVPLQGDFSAEHMIFGV
EGIDPLRRDKLIDLLDIDLRWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVA
RMDLLDYFKEECEQRGTTIVYATHIFDGLETWASHLAYIQDGELRRSEKLSEVHELKNSS
NLLSVVESWLRTETKCEKKKHVNPPAQVQKTSTLGTSPFMSSRHMAYYR
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggaggagaagagaacaacagtatcagagtatgtggcatgcaattctcatac
gaaggccaaccacccatcttcgccgacttcaacctcaacatccaacccggatctcgatgc
ctcctcgttggcgccaacggatctggaaagaccactttgctgaagattcttgcgggtaag
catatggtgggagggagagatgtggtgcgtgtgctgaatcgttcggcttttcatgacacc
cagttggtgtgtgatggtgacttatcctatttgggaggaacttggagtaaaaccattggc
tctgctggtgaggttccacttcagggtgatttttctgccgaacatatgatatttggagtt
gaagggattgaccctttaaggagagacaagctgattgatctactagatattgatctgcga
tggagaatgcataaggtatctgatgggcagaggcgtcgagtccaaatctgcatgggtctt
cttcatcctttcaaggtccttttgctagatgaaattacagttgacctggatgttgttgct
agaatggatttacttgactatttcaaggaagaatgcgaacagagaggaaccacaatagta
tatgcaacccatatttttgatggcctggagacatgggcatcacatctggcatacatccaa
gatggtgagttgaggaggtcagagaagttatcagaggttcatgagttgaagaattcatcc
aatttgctttcagtggttgagtcatggctccgtactgaaaccaaatgtgagaaaaagaaa
catgttaaccctcctgcccaagtccagaagacatctactttgggtacttctccttttatg
tcatccagacacatggcatactatcgttaa
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