Quercus lobata (valley oak): 115979922
Help
Entry
115979922 CDS
T07350
Name
(RefSeq) transcription factor PIF3 isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04075
Plant hormone signal transduction
qlo04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
115979922
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
115979922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
qlo03000
]
115979922
Transcription factors [BR:
qlo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
115979922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
115979922
NCBI-ProteinID:
XP_030957900
LinkDB
All DBs
Position
3:11169207..11173925
Genome browser
AA seq
748 aa
AA seq
DB search
MPLSELYRMAKGKLESTREKNTTCSNDLSFLPENDLFELVWENGQILKQGQSSRARKSPT
RNNFQSHCLPSYTSKIRDKDIGNGSNSKMGKFGGMMSVLNEIPMSVPSDEMDLSQDDDMM
PWLNYPIDDSLQHEYCSEFLPELSGVTVNELSNQNNLASIDKRSSCNLVYRDCHTNPVND
VVSLGQGNASKVSSVGVGEATRPRTTPLYPSSSSQQCQSSLRSKVTDGAGNNTSSIMHRA
VCGDSTQVASAAGGFPTIKMQKKDQMSSNNNSNLMNFSHFSRPAALVKANLQNMGLMAGS
DLSSMERITSKDKGSAASIKHPPESTHINSISGLQKESSSHCKPLAEPAPSKVDLKPSED
KPVEEKVASKQSEAVCPDEASRNDNISNQVFGESVTKGLPDGEKTTEPVVASSSVCSGNS
VERASDDPTHNLKRKFRDTEESECHSEDIEEESIGAKKAAPGRAGTGSKRSRAAEVHNLS
ERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQHLSLVVQIMSMGAG
FYMPPMMLPTGMQHMSAPHMAHFSPMGVGMGMGMGMGYGMGMPDMNVGPSGYPMIQVPPM
QGAHFPGPPISGHTAMHGMAGSNLQMFGLPGQGLPMPMPRAPLIPLSGGPVMKSATGLNA
CGVVGPVENVDSAPASRSKDPMQNVNSQAMQITGASSSMTQTSSQCPATNARFEPSSLVQ
NNGQVSDVVGNTAVNSANGNDLVPSKPA
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgtctgagctgtatcgaatggctaaaggaaagcttgagtctactagggaaaag
aacaccacttgttcaaatgatctgtcttttctaccagagaatgatctttttgagctggta
tgggaaaatggtcagattttgaagcaaggtcagtccagtagagctagaaagagcccaact
aggaacaactttcaatctcactgtttaccatcttacacctctaagataagagataaagat
atagggaatggcagcaattcaaagatgggaaagtttgggggaatgatgtctgtattgaat
gaaatcccaatgtcagtgccatcagatgagatggatttgagtcaagatgatgacatgatg
ccttggttgaattatccaattgatgattctttacaacatgaatattgttctgagttcttg
cctgaattatctggggtcactgtaaatgaactatccaaccagaataatttggcatctatc
gacaaaagaagtagttgtaatctggtatatagggattgccatactaatccagtaaatgat
gttgtgagtttaggacaggggaatgcgtcaaaagtttcttcagtaggagtaggtgaggcc
acaagacctagaactactcctttatacccatcatcatcatcacaacaatgtcaatcatct
cttagatcaaaggttacagatggcgctggcaataatacgagcagtatcatgcatcgtgct
gtatgtggggattcaacacaggttgcatctgctgcaggtggatttcctactataaagatg
cagaagaaagatcaaatgtcatctaacaataactccaatctgatgaatttctctcatttc
tcacgtcctgctgctcttgtgaaggctaatcttcagaacatgggcctcatggctggttcg
gatttatcaagcatggaaaggataacaagtaaggacaaaggttctgctgcaagtattaaa
catcctcctgaatcaacacatatcaattccattagtggtttacaaaaagaatcaagttcc
cattgtaaacctcttgctgagcctgcgccatccaaggttgatttaaaaccatcagaggat
aagcctgttgaggaaaaagttgccagtaaacaatctgaggctgtctgtccggatgaggcc
tctaggaatgacaatatctccaatcaagtcttcggtgaaagtgtgacaaagggactgcca
gatggtgagaagactacagagcctgttgttgcttcttcttctgtttgctcaggcaatagc
gtcgagagagcttccgatgatccaacacataatttgaagagaaaatttcgtgacactgaa
gagtccgaatgccatagtgaagacattgaagaggaatcaattggggcaaaaaaagcagct
cctggccgagcgggtacaggttcaaagagaagccgggcagcagaagtacataatttatcc
gaaaggaggcgaagagataggatcaatgagaagatgcgtgcattgcaagaacttattcca
aactgcaataaggtggacaaagcttcaatgcttgatgaggccatagagtatctgaagaca
cttcaacttcaagtgcaacatctttccctcgttgtgcagattatgtcaatgggagctggt
ttttatatgcctccaatgatgttaccaactggaatgcaacacatgagtgcacctcatatg
gctcatttctctcctatgggcgttggaatgggaatgggaatgggaatgggctatgggatg
ggtatgccagacatgaatgttggaccttcgggttaccctatgattcaagtgccccccatg
caaggagcacatttccctggcccacctatatcaggacacactgctatgcatggaatggcc
ggatctaaccttcagatgtttgggcttcctggtcaaggacttccaatgccaatgcctcgt
gcaccattaattcctttgtcgggagggcctgttatgaagtctgccacaggacttaatgcc
tgtggggttgtaggtcctgtggaaaatgtggattcagctccagcctctaggtcaaaggat
ccaatgcagaatgttaattctcaagcgatgcaaatcactggtgctagtagctcaatgact
cagacatctagtcagtgtccagcaacaaatgcaagatttgaaccatcttcattggtgcaa
aataatggtcaagtctcagatgttgtcggcaacacagctgttaactctgcaaatggaaat
gaccttgtgcctagtaaaccagcttga
DBGET
integrated database retrieval system
