Quercus lobata (valley oak): 115979984
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Entry
115979984 CDS
T07350
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
115979984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115979984
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
115979984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
115979984
NCBI-ProteinID:
XP_030958002
UniProt:
A0A7N2L6L5
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All DBs
Position
3:22647251..22662711
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AA seq
963 aa
AA seq
DB search
MGVPAFYRWLADRYPRSIADVVEAEEENVDVSSPNPNGMEFDNLYLDMNGIIHPCFHPEG
KPSPTTYDDVFKSIFDYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAAD
AEAEEERLRKEFEAEGRNLTPKEKPATCDSNVITPGTQFMAVLSVALQYFIQSRLNRNPG
WRNTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIMLSLATHEIH
FSVLREVITLPGHQEKCFSCGQVGHLAADCRGRAGNGAEDRNAVDDTPIHKKKYQFLNLW
VLREYLQYDLEILNPPFEINFERIVDDFVFMCFFVGNDFLPHMPTLEIREGAINLLMHIY
RSEFAAMGGYLTDAGEVLLDKVEHFIQSVSVYEEQIFQKRARIQQAFENNEEMKLKSRRE
SAEEPQAPVVDKVKLGEPGYKERYYAEKFNVSEPEEIDEVRKDVVLKYVEGLCWVCRYYY
QGVCSWQWFYPYHYAPFASDLKDLVDLEITFFLGEPFKPFDQLMGTLPAASSSALPEKYR
KLMTDLSSPILEFYPSEFDVDMNGKRFAWQGVVKLPFIDEKKLIAATKKVEGALTDEEKF
RNSVMLDLLYVHPAHPLASHIIHYYGIYFQLPPRERYVWVIDANASGGMNGYLWLCERNG
VSYIVPSPVSGLADINNNQVLNVTYLNPQAHKHIPEPPKGVLMPGKILTPIDLKPFPVLW
HEDNGFRRHQGRERPQVPGAIAGPLLGEAAHRLVKNTLNIKNNNSSSGYLEQGAWQNFPG
NYMANRPRPAGPSGYQRGFTEDPNYYHGHHNNFPGMMARPRFSVASNGLQGERQNLRTQD
RLQYPDQIRNLRTGISALAIEESVRTRPPAVMSPRPTAMMSPRMPNLGNSTNLPNQFVEN
MGAPPTPPPKWINKAPAANGGMHIRQQETASWGTSEKQVKKIYQVKTRSPQDIADSGDNS
DNM
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgccggcgttttatcggtggctggcggaccggtatccaaggtcgatagctgac
gtggtggaggcggaggaggagaatgtggacgtgtcgagtccaaaccctaatggaatggag
ttcgataacttgtacctggacatgaatggaatcattcacccttgctttcatcctgagggc
aagccttcacctaccacctatgacgatgtattcaaatcaatatttgattacattgaccat
ctcttctcattagttcgcccaaggaagcttctttatatggcaattgatggggttgcacca
agagctaaaatgaatcagcaacgttcacggcgcttcagagctgcaaaagatgcggctgat
gcggaagctgaagaggaaaggctgaggaaagaatttgaggctgagggaagaaatttgacc
cctaaagaaaagcctgcaacttgtgattcaaatgtcatcactcccggaactcagtttatg
gcggtgctttcagtagcacttcagtactttatacaatctaggttgaaccgcaatccaggc
tggcggaatacaaaggttattctttctgattcaaatgtacccggtgaaggggaacacaaa
atcatgtcatacattcgattgcaacgtaaccttcctggtttcaatccaaacactcgtcat
tgtctatatggtctggacgctgatctgattatgctatctttagctacacatgagattcat
ttttctgtactaagagaggtgattactctgcctgggcatcaggaaaaatgttttagttgt
ggccaagttggtcatcttgcagctgattgtcgtggtagggcaggcaatggagctgaggat
cggaatgccgtagatgataccccaattcacaagaagaaatatcagtttctcaacctatgg
gtgttgcgagaatatctgcaatatgatttggagattctgaaccctccatttgagattaac
ttcgaacgaattgtagatgattttgtatttatgtgtttttttgttggtaatgactttctt
ccacatatgccaacattggagatcagggagggtgctataaatttactgatgcatatttat
agaagtgagtttgctgcaatgggtggttatcttactgatgcgggtgaggttttgttagat
aaagtagaacattttattcagtctgtttctgtttatgaagagcaaatctttcaaaagagg
gctcgaattcagcaggcttttgagaataatgaagagatgaaacttaaatcaagaagagag
tctgctgaagagccacaagcaccagtggtagacaaggttaagctaggggagcctggatac
aaggaaaggtattatgctgagaaatttaatgtatcagagccagaggagattgatgaagtt
agaaaagacgtggttttgaagtatgtggaaggtttatgttgggtctgccgttattactac
caaggtgtttgctcctggcaatggttttatccataccattatgctccttttgcttctgat
ctcaaagatcttgttgatttggaaataacttttttcttgggagagccatttaaacccttt
gatcagctcatgggaaccctacctgcagcaagttcaagtgccctgccagagaaatacaga
aagttgatgactgacctgtcatcacccatccttgaattctatccttctgaatttgacgtt
gacatgaatggcaagcgctttgcttggcagggtgttgtcaagttgccattcattgatgag
aagaagttgattgctgcaacaaagaaagttgaaggcgctttaacggatgaagaaaagttt
cggaatagcgtgatgcttgatttgctttatgtccaccctgcccatcctttggcttcacat
ataattcactattacggaatatattttcagttgcctccacgtgaaagatatgtttgggta
attgatgcaaatgctagtggtggaatgaatggatacctttggttatgtgagagaaatggt
gtcagctatattgtcccttcccctgtcagtggattggcagacattaataataaccaagtc
ttaaatgtaacatatcttaatcctcaagcccataaacacattccagaacctccaaagggt
gtgctcatgcctggaaagattttaacacctatagatcttaaaccgttccctgtcttgtgg
catgaagacaatggtttccggcggcaccaagggagggaaaggccacaagtccctggagca
attgctggtccattactgggagaagcagcacatcgtcttgtgaagaacacacttaacatc
aaaaataacaattcatcctctggatatttggagcaaggagcatggcaaaatttcccaggc
aactatatggccaacagaccgaggccagctggaccctctgggtaccaaagaggctttact
gaagacccaaattattatcatgggcatcacaacaatttcccaggcatgatggctaggcct
aggtttagcgttgcatcaaatggcctgcaaggtgaaagacagaatttgaggacacaagat
agattacaatacccagatcagatccgcaacctgaggactgggatatctgctttggcaata
gaagaaagtgtgagaaccagaccaccagcagtgatgtcacctaggccaactgcaatgatg
tcaccgaggatgccaaatttaggaaactcaacaaacttacccaaccagtttgtggagaac
atgggggcgcctccaacaccacctcctaagtggatcaataaagcaccagctgcaaatggt
ggcatgcatattagacaacaagaaactgcatcttggggaaccagtgagaagcaggtgaag
aagatttatcaagttaagacacgcagtccccaggatattgcagattctggagataattcc
gataatatgtga
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