Quercus lobata (valley oak): 115982085
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Entry
115982085 CDS
T07350
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115982085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115982085
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115982085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_29
AAA
SMC_N
AAA_23
Arf
ORC-CDC6-like
AAA_30
Zeta_toxin
nSTAND3
AAA_7
Motif
Other DBs
NCBI-GeneID:
115982085
NCBI-ProteinID:
XP_030960452
UniProt:
A0A7N2L679
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All DBs
Position
3:17771614..17776435
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AA seq
330 aa
AA seq
DB search
MGLKQSEKSEPMIEINGLKFTYPGIDGHPPPGSTPLIEDFSLSLHSGDRCLLVGSNGAGK
TTILKILGGKHMVEPHMVRILGRSAFHDTTLTSSGDLSYLGGEWKREVAFAGFEVAIQMD
VSAEKMIYGVAGIDPQRRDELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD
EITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM
DKVKEISKLSLMRTVESWLRKERDEERERRKQRKACGLPEFEKQIEGSRVTGDPARVATR
ALNNGWAAGRLHSTIAGEENFVLSSNRVLR
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgaagcaaagtgaaaagtcagagccaatgatagagatcaacggtctgaaattc
acgtacccgggaatcgacggtcatcctccgccgggttccactcctttgatcgaagatttc
tctctctctcttcactccggtgatcgctgcctccttgttggatccaatggcgctgggaaa
acgacaattctgaagatattgggagggaagcacatggttgaaccccatatggtccgcata
cttggaagatcggcatttcatgacaccacattgacttcttctggtgatctcagctatctt
ggtggcgagtggaagcgagaagttgcttttgccggatttgaggttgcaatacaaatggat
gtttctgcagaaaaaatgatatatggagttgcgggtattgatcctcaaagaagagatgag
ttaattaaggtactggatatcaatctatcatggaggatgcacaaggtatctgacggtcag
agaagacgagtgcaaatctgtatgggtcttctcaagccattcaaggtccttcttcttgat
gagataacagttgaccttgatgttctagcaagggctgaccttctgaagtttctaagaaag
gagtgtgaagagcgaggtgccacaatcatctatgcaacacatatatttgatggcctagag
aactggccatctcatatagtttatgtggctcatgggaagttgcaattagcaatgcctatg
gataaagtcaaggaaatcagcaaactgtcactaatgagaacagttgaaagttggctgagg
aaagaacgagatgaggagagggagagaaggaaacagagaaaagcatgtggacttccagaa
tttgagaaacaaattgaaggaagtcgtgtgactggtgatccagcccgtgttgccactcga
gcgcttaacaatggttgggcagcaggccggttgcattccaccattgctggagaagagaac
tttgttttaagctcaaatagagttctgagatag
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