KEGG   Quercus lobata (valley oak): 115989355
Entry
115989355         CDS       T07350                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    115989355
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:qlo03021]
    115989355
Enzymes [BR:qlo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     115989355
Transcription machinery [BR:qlo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     115989355
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 DUF2028 Glyco_transf_28
Other DBs
NCBI-GeneID: 115989355
NCBI-ProteinID: XP_030968887
LinkDB
Position
5:complement(69259029..69278701)
AA seq 1484 aa
MTCMKSKSPMENDLYEEQQFPSGLLTGICFNIASKKDTEKISVLAVDAVSDLSDPKLGVP
NLSNECLTCGAKDTKNCEGHFGFIDFPFTIVHPFFLSEAAKILNKICPGCKSIKQELQVK
LDGDSAFDHNQPKGCKYCVGNSTEWYPTVKFKVSTNELFKKSAIMVEVNERLPKKSQTES
LRSLPADFWDFIPKDDNQEESNLKPNRRVLSHAQVHYLLKSVDLKFIKKFVSRTDSLFLN
CFPVTPNYHRVCEITHTIPQQLFFDERTRAYKKLVGFTGTANELGSRVLDCLKFSKLSSG
KSSNNVLASAQQKNGTDPSSSSGLRWIKDVVLGKRSDHCFRMVVVGDPYIKLSEIGIPCH
IAEQLQISESLNRWNFDKFIVDCTLSFIEKGKVYVRRKGELVCVHHINEFHIGDTMYRPL
NNGDIVLINRPPSIHQHSLIALSVKVLPITSVVSINPLCCSPLRGDFDGDCLHGYVSQSI
DARVELSELVALDRQVIDGQNGRNLLSLSQDSLTAAHLIMEDGVSLNLFQLQQLQMFSPY
QFPLPAIVKAPSLNGSVWTGKQIFSMLLPPGFDYVFPSNGVHVSNGELLSSEGSFWLCDN
DGNLFHSLVKHCRGKVVDFLYAAQEVLCEWLSMQGLSVSLSDLYLCSNLRSRKNMMDEIN
FGLKEEEQTSNFKLLMIDSFQDFLAKGDEENSVVLDVEHFYYEKQKSAALCQVSADAFKQ
VFQDIQTLVYKYASKDNSFLVMFKAGSKGNLLKLVQHSMCLGLQHSMVPLSFRIPRQLSC
ASWNNRKAHDSVQKVENSPEHAGSYIPYAVVENSFLAGLNPFECFVHSVASRDSSFSANA
DLPGTLNRRLMFLMRDLYTAYDGTVRNAYGNQLIQFSYNINKDKSTPNSSTHDLFSESVD
DDDAIGGQPVGSWSASAISEVAYSALDQPISLLQTSPLLNLKNILECGSRKHNSDTTWSI
FFSKKLGRRTHGFEYGALEVKNHLERLIFSDIVSTVMITFSPQTCSKTHFSPWVCHFHLC
KEIVKRRGLTVHSIMSSLHKRCNSSETESESNLPNLQILSDDCSVVETQKEDNDAFCITV
AIPEIYKTPLALDSVRDSFIPFILQTVVKGFPEIKKVDILWNDQPKVSRRHHGSFSELYL
RVAMSAGCDTTDLESLISNDCVQMTDMIDWSRSHADNVHDIVLAFGIEAGWKYFLESLEV
AISDVGKSIHPQHLVLVADSLSATGEFVGLNARGIARQREHASVSSPFMQACFSNPGACF
LNAAKAGVVDNLKGNLDALAWGNVPSTGTGGHFDILYSGKMPELENPVDFNSLMGRQTIS
DKQNVKAETLECNSMSDNSGAQPVYKYGDLAMEGLKKLESKNNSVLKRVWTPNDILNLSH
ALKQILHKYPINQMVNDQDKSILMTALYFHPRREEKFGIRAKDVHAIKVVCHPKYQNTRC
FEVERNDGTTEDFSYHKCVIAALEIIDPKRAEAYKSKWLQNCNS
NT seq 4455 nt   +upstreamnt  +downstreamnt
atgacttgtatgaagagcaagtctcccatggaaaatgatttgtatgaagagcagcaattc
ccatctggtctcctcactggcatatgttttaatattgcatctaaaaaggatacagagaag
atatctgttctagcagttgatgcagttagtgacctctctgatcctaagttgggagtccca
aatctgtctaatgaatgcttgacatgtggtgctaaagatactaaaaactgtgaaggtcat
tttgggtttatcgatttcccattcaccatagtccaccctttttttctatccgaagctgca
aagattttgaacaaaatttgcccaggatgtaaatctatcaagcaagaacttcaggtcaag
ctggatggggattcagcatttgatcataatcaacctaagggttgcaaatattgtgtggga
aattcaacagagtggtatccaacagtaaaattcaaagtttccactaatgaactctttaaa
aaaagtgcaattatggtagaggtaaatgaaaggttgccaaagaagtctcagacagaaagt
ttaaggagtctaccagctgatttttgggattttattccaaaagatgataatcaagaagaa
agtaatttgaaaccaaatagaagggttctatcacatgcccaggttcattatttgttgaaa
tctgtagatcttaagttcatcaaaaagtttgtttcgaggacagattcacttttcctaaac
tgttttcctgtgacaccaaattatcatcgtgtgtgtgaaattacacatacaattccacag
caattattctttgatgaacggaccagggcctacaagaaattggttggttttaccgggaca
gctaatgagttgggttctcgtgttctggactgcctgaaattttcaaagttaagctcaggc
aagtcatctaataatgttttggcttctgcccaacaaaaaaacggtacagatccttccagc
tcttctgggttgagatggatcaaagatgttgttcttgggaagcgaagtgatcattgtttt
cgcatggttgttgttggcgatccatatatcaagctcagtgaaattggtataccatgtcat
attgcagagcaattgcaaatttctgagagtttgaatagatggaactttgataagttcatt
gttgactgtacactatcttttattgagaagggaaaggtttatgttcgcagaaaaggtgaa
ttggtttgtgtccatcatattaatgaatttcatattggggacacaatgtataggcccctg
aataatggagatatcgtgttgataaataggcctccatccatacatcaacactcccttata
gctttatctgtcaaggtcctgccaataacttcagttgtttccataaacccactttgctgt
tctcctcttcgcggggattttgatggtgactgtcttcatggctatgtttctcaatcaatt
gatgctagagttgaacttagtgagcttgttgctttagataggcaagtaatagatgggcaa
aatggtaggaacctgctttcactaagtcaggatagtttaactgctgctcatttgatcatg
gaggatggggtttccttgaacctttttcaactgcagcagctacaaatgttttccccatat
caatttccgttgcctgcaatcgtcaaagctccctcacttaatggttctgtttggactggc
aagcaaatattcagcatgcttctgcccccagggtttgattatgtttttccttcaaatggt
gttcatgttagtaatggagagcttttatcttctgagggatcgttttggctatgtgacaat
gatggcaacctttttcatagtcttgtcaaacattgtcggggtaaagtagttgacttcttg
tatgctgctcaggaagttctttgtgagtggttgtctatgcagggcttgagtgtttcactt
tcagacttgtacctctgctctaacttacgctcccggaaaaacatgatggatgaaataaat
tttggtttaaaagaagaagagcagacctctaatttcaaactgttgatgatagattctttt
caggattttcttgccaaaggtgatgaggagaattctgtggttcttgatgtggagcatttc
tattatgagaagcaaaaatctgcagcactatgtcaagtctctgctgatgctttcaagcaa
gtgtttcaggatattcaaactttagtctacaaatatgctagtaaggataactcatttctg
gttatgtttaaggctggaagcaagggtaatttgctgaaattggttcagcatagcatgtgt
cttggcttgcaacattcaatggttccgctatcatttagaatcccccgccaactttcatgt
gcttcctggaataatcgaaaggcacatgattcagtccagaaggttgaaaattctcctgaa
catgctggatcttacatcccatatgctgtggttgaaaattcctttctggcgggcttgaat
cctttcgaatgttttgttcattcagtagcaagtcgagatagttctttcagtgccaatgca
gatctccctgggactttgaaccgaaggcttatgttcttaatgcgcgatttgtataccgca
tatgatggaacagttagaaatgcatatgggaatcagcttattcagttctcttataatatt
aataaggacaaatcaactccaaatagcagcacccatgacttatttagtgagagtgttgat
gatgatgatgccattggtggccagcctgtgggttcatggtctgcttctgccatttcagaa
gtggcatatagtgctttggatcaaccaattagtctacttcaaacttctccattgctgaat
ctaaagaatatactggaatgtggttcaagaaaacataattccgacacaacttggtcaata
tttttttctaagaaacttggaagacggacgcatggttttgagtatggagccttggaggtt
aagaatcatttggagagactaatattttcagacattgtgtctactgtcatgataaccttt
tctccacagacttgtagcaagacacatttcagtccttgggtctgtcattttcatttatgc
aaggaaattgtgaagagaaggggattaacagtacattcaatcatgagttcccttcacaag
aggtgtaattcttcggaaacagaatcagaatcaaatcttcccaacttgcaaatattgagc
gacgattgttctgtagttgagacacagaaggaagacaatgatgcattttgcatcactgtc
gcaatacctgaaatttacaagactcctttagcattggattcagttagagactccttcata
cctttcattcttcaaacagttgttaaaggattccctgagataaagaaagtggacatttta
tggaatgatcaacctaaagtatcaagacgtcatcatggttcgtttagtgaactctacttg
agagttgctatgtcagcaggctgtgatacaacagatcttgagagtttaatttcgaatgat
tgtgtccaaatgacggatatgatcgactggtcgcgcagtcatgcagataatgttcatgat
attgttttggcctttggaatagaagctggatggaaatattttcttgagagtttagaagtt
gcaatatctgatgttggaaagtccatacatcctcaacatttggttcttgttgctgatagt
ctatccgctacaggagagtttgttggcttgaatgcaagaggcattgctcgacaaagagaa
catgcatctgtctcatcacccttcatgcaagcgtgcttttctaaccctggtgcttgcttt
cttaatgctgctaaggctggagttgtggataatcttaaaggaaatcttgatgcattggca
tggggaaatgtgccttctacagggactggtggccactttgacattctatattctgggaag
atgcctgagcttgagaaccctgtagattttaatagcctgatgggcaggcaaactatttct
gataagcagaatgtaaaggctgaaacacttgaatgcaacagtatgtctgataattctggt
gctcagcctgtctacaagtatggcgatcttgcaatggaaggccttaaaaagttagaaagc
aaaaataattctgtattaaaaagggtttggacaccaaatgatattctgaatctgtcccat
gcgttgaagcagatattgcacaagtatccaattaatcaaatggtaaatgaccaagacaag
tcaattttgatgacggccttatattttcatcctcgaagagaagaaaagtttggaattcga
gctaaagacgtacatgccataaaggttgtttgtcaccctaagtatcagaatacacgctgc
tttgaagtggaacgaaatgacgggacaactgaagatttctcgtaccacaagtgtgtcatt
gctgctttagagatcattgatcctaaaagggcagaagcctataaatcaaaatggttgcaa
aactgcaattcctaa

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