Quillaja saponaria (soapbark tree): O6P43_011181
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Entry
O6P43_011181 CDS
T09778
Name
(GenBank) 5'-3' exoribonuclease
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
O6P43_011181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_011181
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
O6P43_011181
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GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
KAJ7973445
UniProt:
A0AAD7Q247
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All DBs
Position
4
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AA seq
967 aa
AA seq
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MGVPAFYRWLADRYPLSIVDVKEEEADAGNNDVLFPIDVSKPNPNGMEFDNLYLDMNAII
HPCFHPEGKPAPATYDDVFKSIFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDAADSEAEEERLRKEFEAEGKYLTPKERPETSDSNVITPGTQFMAVLSVALQYYVQ
TRLNHNPGWRNTKVIFSDSNAPGEGEHKIMQYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGQQEKCFVCGQVGHFAAECHGRPSDEAEDWNPVDDIPIHKK
KYQFLNIWVLREYLQYEMEIPNPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMHVYRKEFTAMGGYLTDAGEVLLDKVEYFIQSIAVYEEQIFQKRGRIQQAYENNEA
ARARREFPEEPRCPIVDKVKLGEPGYKERYYAEKFNVSNPEDIDNIKKDVVLKYVEGLCW
VCRYYYQGVCSWQWYYPYHYAPFASDIKDLADLEITFFVGEPFKPFDQLMGTLPAASSSA
LPEKYRNLMTDPSSPILDFYPSDFEVDMNGKRFAWQGVAKLPFIDEKKLLSATRKLEGSL
TKEEHLRNSVTLDLLYVNSAHGLAPNILLYYQIYCQLPPYERPVWAIDTNASEGMNGYIW
LDERNELRNFLHSPINGLQDIVDNQVLNVTYLNPCKNKHVPKPPEGVVMPKKVLKSIDIK
PFPVLWHEDNGGRRQGRERPQVPGAIAGPQLGEVAHRLVKNTLGIKSSDIAHGQLEQPSR
DIPSNHAINRLRPAGPSGYGRNFGEDTSYYHGRYNYHQGQGVTSRPRFPFSSNGGQGDGQ
NFRIKDKSQYQEQCHNFRTGFSALTTEENVRFRPPAVGSPKPPPMMPARMPNSGHPANIN
QQFVQNFGSPPTPPPKWLNQAPAANGRLHIRHQEPVPGGGLYDRHVKKVYQVKSPLLQDM
PECGDQQ
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccagctttttaccggtggctcgccgaccggtatcccctttcaatcgttgac
gtaaaggaagaagaggctgacgccggaaacaatgacgtactcttcccaattgatgtatct
aagcctaatcccaatggcatggagttcgacaacttgtatttggatatgaacgctatcatc
cacccttgttttcaccccgaaggcaagcctgcacctgctacctacgatgatgtattcaaa
tcaatattcgactatattgatcacctcttttcgttggttcgcccaaggaagcttctctat
ctggcaattgatggggttgcaccaagagctaaaatgaaccagcaacgttctcggcggttc
agagctgcaaaagatgcagctgactcagaagccgaggaggagagattgaggaaagaattt
gaggctgaggggaaatatttgactcctaaagaaaggccagaaacatctgattcaaatgtc
atcactcctggcacccaatttatggcggtgctgtcagtggcacttcagtattatgtacaa
actaggttgaaccacaatcctggctggcggaatacaaaggttatcttttctgattcaaat
gcacctggggagggagaacacaaaattatgcagtacattcgtttacagcgcaaccttcct
ggttttaacccaaacactcgacactgtctttatggtttggatgcggatctcattatgctc
tccttggctacgcatgaggttcacttttcgatattgagggaggtgattactctgcctggg
caacaagaaaagtgttttgtgtgtggccaagttggtcattttgctgctgagtgccatggt
aggccaagtgatgaagctgaagattggaatccagtagatgatataccaattcacaagaag
aaatatcagttcctcaacatctgggtgctgcgtgaatatttgcaatatgaaatggaaatt
cccaatcctccatttgagattgattttgaacgcatagtggatgattttgtatttctctgt
tttttcgttggcaatgactttcttccacacatgccaacattagagatcagggagggtgct
ataaatttattgatgcatgtttatagaaaggaattcactgccatgggtggttatcttact
gatgcgggtgaggttttgttggataaagtagaatacttcatccagtctatcgctgtttat
gaagaacaaatctttcagaaacggggtcgaattcagcaggcttacgaaaataatgaagca
gctagagcaagaagagagtttcccgaagagccacgctgcccaattgtggataaggttaag
ttgggggaacctggatacaaggaacggtattatgctgagaagttcaatgtatcaaatccg
gaggacattgacaatattaagaaagatgtagttttgaaatacgtagaaggcctatgttgg
gtgtgccgctattactatcaaggtgtttgctcgtggcaatggtactacccgtaccattat
gccccttttgcttctgatattaaagatctagctgatttggaaataactttctttgtggga
gaaccattcaagccatttgaccagctcatgggtaccctacctgctgcaagttcaagtgct
ttgcccgaaaaatatagaaatttgatgacggatccatcgtcacctatccttgacttctat
ccttctgattttgaggttgatatgaatggtaagcgctttgcatggcagggtgttgccaag
ttgccattcattgatgagaagaaactgctttctgcgacaaggaagcttgaaggctcgtta
acgaaggaggagcaccttcggaatagcgttacacttgacttgctttatgtcaattccgcg
catggtttggctccaaacattctattgtactaccaaatctattgtcaattgcccccatat
gaaagacctgtttgggcaattgacacaaatgctagtgaaggaatgaatggatatatttgg
ttagatgaaaggaatgagttgagaaattttctccattcaccaatcaacggtttgcaagat
attgtggataaccaagtcttaaatgtgacctatcttaatccttgtaagaacaaacatgtc
ccaaaacctcccgagggtgttgtcatgcccaaaaaggttttgaaatcaattgatattaaa
ccatttcctgtgttatggcatgaagacaatggtggtcggcgtcaaggcagagaaaggcca
caagtccctggagccatagctggccctcaattgggagaagtggctcaccgtcttgtgaag
aatacccttggtatcaaatctagcgatattgcccatgggcagttggagcaaccgtctcgg
gacatcccaagcaatcatgcaatcaacagattgagaccggctggaccctctggatatgga
agaaattttggtgaggacacaagctattatcatggacggtacaattatcaccagggacag
ggagtaacgtctaggcctagattccctttctcatctaatggtgggcaaggagacggacag
aattttaggataaaagacaagtcacagtatcaagaacagtgccacaatttcaggactggg
ttttctgctttgacaacggaggaaaatgtcagatttaggccacctgcagtgggatctcca
aaaccacctccaatgatgcctgcgaggatgccaaattcaggacacccagcaaacataaac
caacaatttgtgcagaacttcggatcacctccaaccccccctccgaaatggcttaatcaa
gctccggctgccaatggcagattgcatattagacatcaggaacctgtaccagggggagga
ctgtatgacaggcacgtgaagaaggtataccaagttaaatcaccactcctgcaggatatg
ccagagtgtggagatcagcaatga
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