Qipengyuania soli: IRL76_06650
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Entry
IRL76_06650 CDS
T09808
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
qso
Qipengyuania soli
Pathway
qso03030
DNA replication
qso03410
Base excision repair
qso03420
Nucleotide excision repair
qso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
qso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IRL76_06650 (ligA)
03410 Base excision repair
IRL76_06650 (ligA)
03420 Nucleotide excision repair
IRL76_06650 (ligA)
03430 Mismatch repair
IRL76_06650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
qso03032
]
IRL76_06650 (ligA)
03400 DNA repair and recombination proteins [BR:
qso03400
]
IRL76_06650 (ligA)
Enzymes [BR:
qso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IRL76_06650 (ligA)
DNA replication proteins [BR:
qso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IRL76_06650 (ligA)
DNA repair and recombination proteins [BR:
qso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IRL76_06650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IRL76_06650 (ligA)
MMR (mismatch excision repair)
DNA ligase
IRL76_06650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IRL76_06650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QPD00201
UniProt:
A0A7S8IW14
LinkDB
All DBs
Position
complement(1325861..1327939)
Genome browser
AA seq
692 aa
AA seq
DB search
MGIDQIAPVDMTEADAANELMRLAKAIAHHDLLYHAEDSPEISDQEYDALVRRNAALEAA
FPHLVREDSPSRKVGHAIASSPLSKVTHEVRMMSLDNGFSDEEIAEWVARVRRFLALGEG
DPIAFTAEDKIDGLSCSLRYEKGVLVRAATRGDGQVGEDVTANVQHIADIPKMLRNNPPE
VFEVRGEVYIEKQAFAALNAAQQEIGGKLFANPRNAAAGSLRQKDDKVTAQRPLRFWAHG
WGAASEVPADTQHGVVGKLREWGFPVSPHFTVVDSLEGLLAAYAAIGKSRPDLPYEIDGV
VYKVDRLDYQQRLGFVAKAPRWALAHKFPAERAETTLESIDIQVGRTGKLTPVGRLAPVL
VGGVTVTNVTLHNRDEIARLGVRPGDRVVVQRAGDVIPQLVDNLTRETPRNPFVFPDHCP
ECGSEAVAEEGEVDVRCTGGLICPAQRTERLKHFVSREALDIDGLGEKTIDQFFALGWLE
SPADIYRLKDRREDILALDGWQYRSVEKLVDSIEARRQPDAARLLFGLGIRHVGAVTARD
LMKNFHELPALRHAAQQAHDGDADALAALTSIDGIGGAVVEALGDFFHEPHNVAVWEDIL
SEVSPPPYVVETKESPVSGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTDLLVA
GPGAGSKLKKAAELGIEVIDEAGWAEIVKAAG
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcgaccaaatcgcacctgtggacatgaccgaggccgatgccgccaatgagttg
atgcggctggcaaaagccatcgcgcatcatgacctgctctaccacgccgaagactcaccc
gagataagcgaccaggagtacgatgcgctggtccggcgcaatgccgcgctggaggcggct
ttcccgcatctggttcgcgaggacagcccttcgcgcaaggtcggccatgccatcgcctcc
tcgccgctgagcaaggtgacgcacgaggttcgcatgatgagcctcgacaacggcttctcc
gacgaggagattgccgaatgggtggcgcgcgtgcggcgcttcctcgcgctgggcgagggc
gatccgatcgcctttacggcagaggacaagattgacggcctctcctgctcgctgcgctac
gaaaaaggcgttctggtgcgggccgccacacgcggcgacgggcaggtcggtgaagacgtc
actgccaacgtccagcacattgccgatatcccgaaaatgctgcgcaacaatccgcccgag
gtgttcgaggtgcgcggcgaagtctacatcgaaaaacaggcctttgctgcgctaaatgct
gcacagcaagagataggcggaaagctctttgccaacccgcgaaatgctgcagcaggatca
ttgcggcagaaggacgacaaggtgaccgcgcagcgccccttgcgcttctgggcgcatggc
tggggcgcagccagcgaagtgcccgccgacacgcagcatggcgtggtcgggaagctgcgc
gaatggggcttccccgtttcgccgcacttcaccgtggtagatagtctcgaggggttgctt
gccgcctatgccgccatcggcaagtcgcggcctgacctgccctatgaaatcgacggcgtg
gtctacaaggtcgaccgtctggattaccagcaacggctcggcttcgtcgccaaggccccg
cgctgggcgctggcgcacaagttcccggccgagcgtgcggagacaacgctcgaatccatc
gacattcaggtcgggcgcaccggcaagctgactccggtcggtcgcctcgcacccgtcctc
gtcggcggtgtgacggtcaccaacgtcacgctccacaaccgcgacgagatcgcccgtctc
ggggtccgaccgggcgaccgcgtggtcgtgcagcgcgcgggcgacgttattccacagctt
gtggataaccttacccgcgagacccctcgcaaccccttcgtcttccccgaccactgcccc
gaatgcggcagcgaagccgtggccgaggaaggcgaggtcgatgtgcgctgcaccgggggg
ctcatctgtccggcacaacgcacggaaagattgaagcatttcgtctctcgggaggcgctc
gacatcgacgggctgggggagaagaccatcgaccagttcttcgccctgggatggctcgaa
agcccggcggatatctaccgcctgaaggatcgccgcgaggacatcctggcgctcgacgga
tggcagtaccgatctgtggaaaagcttgtggatagcatcgaggcgcgccgccagcccgac
gccgcccgcctgctcttcggcctcggcatccgccacgtcggcgcggtgaccgcgcgcgac
ctgatgaagaacttccacgagctgcccgcgctccgccatgccgctcaacaggcgcatgac
ggcgatgccgatgcgttggcggctttgacgtcgatcgacgggatcggaggcgcggtggtg
gaggcgctgggcgacttcttccacgaaccgcacaatgtcgcggtgtgggaggacattctc
tccgaggtcagcccgccgccctatgtggtcgaaacgaaggaaagcccggtcagcggcaag
acggtcgtctttaccggcaagctcgaaaccatgagccgcgacgaggccaaggcgcaggcc
gaacggctgggagccaaggccgccggatcggtaagcgccaagaccgatttgctggtcgca
gggccgggcgccgggagcaagctcaagaaggctgctgaactcggcatcgaggtgatagac
gaagcgggctgggcggagatcgtcaaagccgcaggatag
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