Quercus suber (cork oak): 111988940
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Entry
111988940 CDS
T05868
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111988940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
111988940
Spliceosome [BR:
qsu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111988940
Complex C
U5 SnRNP specific factors
111988940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
111988940
NCBI-ProteinID:
XP_023876512
LinkDB
All DBs
Position
Unknown
AA seq
989 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDRESDREDEDEDLTDRPTEEEASDGEDAAAASNGWITASND
VDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIVKPVRNIKFEVGVKDSS
MYVPTPFLVGLMSNPTLVRNVALVGHLQHGKTVFMDMLIEQTHHMSTFDANSEKHLRYTD
TRIDEQERRISIKAIPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLIV
DAAEGVMVNTERAIRHAIQDRLPIVVVINKVDRLITELKLPPKDAYHKLRHTLEVINTNI
AAAASNAGNVPVIDPAAGNVCFASGTAGWSFTLQSFAKLYVKLHGIPFDADKFASRLWGD
MYYHPDARVFRKKPPAGGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLVELGVTLPNA
AYKLNVRPLLRLACSSVFGNASGFTDMLVQHIPSPKASATRKVDHIYTGPKDSMIYKAMK
NCDPEGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIRTGQTVRVLGEGYSPDDEEDMTVKE
VTKLWVYQARDRTPIAEAPAGSWVLIEGVDASIMKTATLCDEDVARYEDVYIFRPLQFNT
LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDL
RELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGA
VSIDWNRKTIGEFFEKSYGWDVLASRSIWAFGPDKQGPNILLDDTLSGEVDKNLLNAVKD
SIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMAT
PRLMEPMYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAYLPVIESFGFE
TDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMS
EDVSINKFFDEAMMVELAQQAADLHQQMI
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttatatgacgagttcgggaactatattggacccgaaattgagtctgac
agagagagtgacagagaggatgaagacgaagatcttacagacaggcctactgaagaggag
gcatcagatggtgaggatgcagctgctgcttcaaatgggtggataacggcctccaatgat
gttgatatggataaccagattgtccttgccgaggacaaaaagtactacccaactgctgaa
gaggtttatggtgaagatgttgaaacattggtgatggatgaagatgagcaaccattagag
caaccgatagtcaaacctgttaggaatataaagtttgaggttggggtgaaggattcttca
atgtatgtcccaacgccattccttgttggtcttatgtcgaatcccactctggttcgaaat
gttgcccttgttgggcaccttcaacatgggaaaactgtcttcatggatatgttgattgag
caaacccaccatatgtccacatttgatgcaaatagtgagaagcatttgaggtacacggat
acaaggattgatgaacaagagagaaggatatcaattaaggcaattccaatgtctcttgtt
cttgaagatagcaattcaaaatcgtacctctgtaacatcatggacacccctgggcatgtt
aatttctctgatgaaatgactgctgctctcagacttgccgatggtgctgtattgattgtg
gatgctgctgaaggagtaatggtaaatacagagagggccatacgccatgcaatccaagat
cgcctacctattgtagttgtaatcaataaggttgacaggctgataacagaacttaagctg
cccccaaaggatgcttaccataagctaaggcatactctggaagtcattaataccaacata
gctgctgccgcttctaacgctgggaatgtcccagttatagatccagctgctggaaatgtt
tgttttgcaagtggtacagcaggatggtccttcactttgcaatcatttgctaaactatat
gtcaaactccatgggatcccatttgatgctgataagtttgcatctcggctttggggagat
atgtattatcatccggatgccagggtttttaggaagaaacctcctgctggcggaggggaa
agatcatttgtccaatttgtgcttgaacccctttacaaaatatatagccaagtgattggt
gaacataaaaagagtgtggaagctactcttgttgaacttggtgtgactcttcccaatgcg
gcttataaattgaatgtcaggcctttgctgagactggcttgtagctcagtttttggtaat
gcctcaggcttcactgatatgctagttcagcatataccttcccccaaagcttctgcaaca
aggaaggttgatcatatatatactggaccaaaagactctatgatctacaaggccatgaag
aattgcgatcctgaaggccccttaatggtcaatgtgaccaagctgtatcccaagtcagac
tgtagtgtctttgatgcttttggtagggtttatagtggcaggataaggacagggcagaca
gtacgagtattaggagagggatattccccagatgacgaggaggacatgacagtaaaagaa
gtaacaaaattatgggtttatcaagctcgagataggacacccatagctgaggctcctgct
ggttcatgggttctcattgaaggtgtggatgcttccataatgaaaactgcaacgctttgt
gatgaggatgttgcacgttatgaggatgtctacatattccggcctctccagttcaacact
cttccagtggtgaaaacagctactgagcctttgaatccaagtgagttgcctaaaatggtg
gagggtcttaggaagatcagcaagagctatcctctagccattaccaaagttgaggagtct
ggtgaacacactattttaggtacaggagagctgtacttggattcaatcatgaaggacctt
agggagctctattctgaagtagaagtcaaggtagcagatcctgtcgtttcattctgtgaa
actgtagtggaatcttcatcaatgaaatgttttgctgaaacaccaaacaaaaagaacaaa
ataaccatgatcgcagagcctttggagagaggacttgcagaggacattgagaatggtgct
gtaagcattgattggaatcggaagacaattggtgaattctttgagaagagttatggatgg
gatgtgcttgcatcacggtccatatgggcatttggccctgataagcaggggcctaacatc
ctactagatgacacactctcgggtgaagttgacaagaacttgctgaatgctgtcaaggat
tccattgttcagggatttcaatggggtgctcgagaaggacccctctgtgatgaacccatc
aggaatgtcaagttcaaaatagttgatgcaaggattgctcctgagccactgcatcgggga
tctggtcaaatcattcccacagctcggcgggtggcctattcagctttccttatggcaact
ccaaggcttatggaaccaatgtattatgtggagatacaaaccccaatcgattgtgtctct
gcaatctatacggtcttatctcgcaggcgtggacatgtaacggctgatgttccccaacca
gggacccctgcttatattgttaaggcatatttacctgtcattgaatcatttggttttgag
acagacttgagataccatactcaaggacaagcattttgcctttcggtgtttgatcattgg
gctattgttcctggggaccctcttgacaagagtattgttctacgaccacttgaaccggca
ccaattcagcaccttgctcgtgaatttatggtgaagacaaggcgtagaaagggaatgagt
gaggatgtgagcattaacaagttctttgatgaggccatgatggttgagctggctcagcaa
gcagctgatcttcatcaacaaatgatatga
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