Quercus suber (cork oak): 112021129
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Entry
112021129 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: sm-like protein LSM3B
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112021129
09123 Folding, sorting and degradation
03018 RNA degradation
112021129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112021129
03041 Spliceosome [BR:
qsu03041
]
112021129
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112021129
mRNA degradation factors
5'-3' decay
Lsm complex
112021129
Spliceosome [BR:
qsu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112021129
Complex C
U2 snRNP components
112021129
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
Motif
Other DBs
NCBI-GeneID:
112021129
NCBI-ProteinID:
XP_065632179
LinkDB
All DBs
Position
Unknown
AA seq
97 aa
AA seq
DB search
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
IDDETYEEIVRTTRRTMPFLFVRGDGVILVXPPLRTA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgaggaagaaagcgcagtgaaggagcctttggatctcatcagactcagcctg
gatgagcgcatctacgtcaagctccgttccgaccgtgaactccgcggcaaactccatgct
tatgatcagcacttgaatatgattcttggtgatgttgaagaaattgttaccactgtagaa
attgatgatgaaacttatgaagagatagttcggactacaaggcgcacaatgccattcctt
tttgttagaggagatggtgtgatattggttntcccgccactaaggacagcttga
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integrated database retrieval system
