Quercus suber (cork oak): 112026514 Help Entry 112026514         CDS       T05868                                  Name (RefSeq) DNA ligase 4   KO K10777   DNA ligase 4 [EC:6.5.1.1] Organism qsu  Quercus suber (cork oak) Pathway qsu03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:qsu00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     112026514  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:qsu03400]     112026514 Enzymes [BR:qsu01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      112026514 DNA repair and recombination proteins [BR:qsu03400]  Eukaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     DNA Ligase 4 complex      112026514 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_N DNA_ligase_A_M BRCT_2 BRCT PTCB-BRCT DNA_ligase_A_C DNA_ligase_IV RNA_ligase Motif Other DBs NCBI-GeneID:  112026514 NCBI-ProteinID:  XP_065631859 LinkDB All DBs Position Unknown AA seq 1340 aa AA seqDB search MTEQMKFSVVCSLFSWMQRSKSLGKKRSKFRKFLDTFCNPRDYFTAIRLVLPNLDRERGT YGLKESVLATCLIDALGMSRDSQDALRLLNWRKGGAQTGANAGNFSLVAAEVLQCRQGMA SGGLTIKDVNDLLDRLSSSENRAEKTSVLSTLINKTNAQEMKWIIMIILKDLKLGISEKS VFHEFHPDAEDLFNVTCDLKLVCEKLRDRTQRHNRQDIEIGKAVRPQLAKRVTDTTAAWK ELHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYGHGMSDIIVQNVLVDRCILD GEMLVWDTSLNRFAEFGSNQEIAKTVKDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERH ELLQKVVKPLKGRLEILVPNGGLDLNTHCLSGKKLYLRFVFVDLVVLSSCLVSEQGFYIM STRLGRSFREKLGDESRISKPYDQEVVGTEGETFGPNKGENSKIEEEQAENERVNTNQGS KLNGYRTQGVPQDQILEWTRDILERRQYEPYDTTGDITKVGMGVPYFEGRVDPTLFSNWI ASIEEYFDWYDMVDDRGVRFAKMKLVGLAKVWWSDVENNIRRIVQLPIGTWQEMKFFRDE GIVLKDLGSKWEPSDRTGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGIA ELPAPNTYPRRFLSFSRVGTGLSDDELDAVVTKLKPYFRKYEYPQQQPPSFYQVTNNSKE RPDVWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYEKPWHECLDVQSFVE LVHSSNGTTQRGMDYGGLQESKPKRMKTSKKGNVSIVPSHLSQTDVSDIKGGSSIFLNMM FYFVNVPPTHSLDSFHKMVAENGGTFSMNLNNSVTHCVAADSKGIKYQAAKRHGDIINYS WILDCCSQKKPLHLQPKHFLFLSNSSKKLQEEIDEFSDSYYQDLDLADIKQLLSNVNRYE DTKTVDCYKKKYCPKEKWSRFHGCCVYLHPPVPSLKPDWEVLMGLALKRLKLVVSIAGGK VSDSLVLATHLVVLSVPGFEVDFETVLNSFTSSEKHLLMNKRLHVVKYQWLEDCMERDER LQEETYSLKTIEVEDSSTVECKHDVALGAICGLDNLDNQNISSSLDVREQRREKTSPEIP KILVSHEEVGKRKRGRPAGGTSNRKGKTTVAQARRTRACTGKKPAKICDNESDESGSHDE KTCREEIKIREGNNKMSCKESSEIQETKMVQDTESSYRGKAAEEEVEKDVRYEEYNIVPN IELIETHRIQDSERPEKFEVMIDPVQAMLLDMIPSLGVKKIETTDTILEDEKLLLDPNTE PTKKKKVSYKDVAGELLKDW NT seq 4023 nt NT seq  +upstreamnt  +downstreamnt atgacggagcagatgaagttcagcgtagtgtgcagcctatttagttggatgcagcggagt aagtcgttgggcaagaagcgctccaagttccgcaaattcctggacaccttctgcaatccc cgcgattacttcacagcaatccgcctcgtgctccccaacctggaccgcgagcgcggtacc tatggcctcaaggagtccgttctcgccacctgtctcatcgatgccctcggcatgtctcgc gactctcaggacgccctccgccttctcaattggcgcaaaggaggcgcccaaactggtgcc aatgccggcaatttctcgctcgttgctgcggaggttttgcagtgtagacaaggaatggcg tctggtggactaacaattaaggatgtcaatgacttacttgatcgtttgtcttccagcgaa aacagggccgagaagacatcagttctttctactctgataaacaagacaaatgcacaggaa atgaagtggattattatgattattcttaaagatctaaagctggggattagtgaaaaaagc gtttttcatgaattccatcctgatgctgaagacttgtttaatgttacctgtgacttaaaa ttggtttgtgaaaagctgagggatagaactcaacggcataatcgacaggacattgaaatt ggaaaagctgtgcgccctcaactagctaagagagttactgatactacggctgcatggaaa gagctccatgggaaagaagtggttgttgagtgcaaatttgatggtgatcgcatccaaatt cataagaatggaactgagatacatttcttctcaaggaactttcttgatcactctgaatat ggacatgggatgtcagacattatcgtacaaaatgttttggttgatagatgtatactggat ggtgaaatgttagtctgggatacatctttgaatcgttttgctgagtttggctcaaatcag gaaatagccaagacagtgaaggatggactggacagtgatcgacagttgtgctatgttgcg tttgatattctttatgtgggggataccagcgtaattcaccaaagcttgaaagaacggcat gagcttctacagaaagttgtgaagcctttgaagggtcgtttggagatcttagtacctaat ggtggtcttgatcttaatactcactgcctttctggtaaaaagttgtacttgagattcgtg tttgtagatttggtggtcttgtcttcttgtttggtatcagagcagggattttatatcatg tctacacgattagggagatcgtttagggagaaattgggtgatgagagtcgaatttccaaa ccttatgatcaagaagttgttggtacagaaggggaaacattcggacccaataagggtgag aatagtaagattgaagaggaacaagcagaaaatgagcgtgtcaacaccaatcaagggtct aaattgaatgggtatcgtacccaaggagtaccacaagatcaaattcttgagtggactaga gatattttagaaagaaggcaatatgaaccttatgatacaactggtgatatcacaaaggtg gggatgggagttccatattttgaaggaagggttgatcccacattattctcaaattggatt gcttctattgaggagtattttgattggtatgatatggtggacgataggggagtaaggttt gctaagatgaagcttgtaggcttggcaaaagtgtggtggtctgatgtcgaaaacaatata aggagaatagtccaactgcccataggcacatggcaagagatgaagttctttagagatgaa gggattgttttaaaggaccttggttccaaatgggaacctagtgatcggactggaaagtgg ttgaaattgaagcctgagtacattcgtgctggttctgatctggatgttctaatcatagga ggatactatggatctggacgccgtggtggggaggtagctcaattcttggtgggcattgca gagcttccagcccctaatacctatcctagacgatttctttctttctccagagtgggcact ggactttctgatgacgagctagatgctgttgtaactaaattgaagccttattttaggaaa tatgagtacccacagcagcaaccaccaagtttttatcaagtaacgaataactcgaaagaa agaccggatgtttggattgacagcccggagaaatcaataattctttcaattaccagtgat atccgaacaataaggtctgaggtatttgccgctccttatagcctgagatttccgcgtatt gaccgagtgagatatgaaaagccttggcatgaatgcttggatgtgcaatcttttgtagaa ctagtacattcaagtaatggtactacacaaagggggatggattatggtggccttcaggaa agtaagccaaaacgaatgaaaacctctaagaagggaaatgtctccattgttccttctcat ttaagtcagactgacgtttctgacattaagggaggctcgtcaatattcttgaatatgatg ttttactttgttaatgtcccaccaacccattctcttgattcattccacaaaatggttgct gagaatggagggactttctcaatgaatttgaacaactcagttacccattgtgttgcagct gatagcaaggggattaagtatcaggcggcgaaacgtcatggagatattattaattactct tggatattggattgttgctcccagaagaagccccttcatttacagccaaagcacttcctc ttcctttccaattcatcaaagaagttacaagaagaaattgatgaattttctgactcttac taccaggatcttgatcttgcagacatcaaacagctcttaagtaatgtgaacagatatgaa gatacaaaaactgttgactgttataagaagaagtactgtccaaaggagaaatggtctcgt tttcatggctgctgtgtttaccttcaccctccagtaccatctttgaaaccggattgggaa gttctgatggggcttgcattgaagaggttgaagcttgtggtttccattgctggtggaaaa gtcagtgacagtcttgtccttgctacccatttggtagtcttgtcagtaccaggttttgaa gtggacttcgaaactgtattaaatagcttcacttcatcagagaagcatcttttaatgaac aagaggttgcatgttgtgaaatatcaatggttagaagactgcatggagagggatgaaaga ttgcaagaagaaacatatagcttgaagaccattgaggtggaagattcaagcactgtagaa tgcaaacacgatgtggctctaggagccatttgtggattggacaatttagacaatcagaat atatcctcttctcttgatgtaagggaacagagaagggagaaaacttctccagaaattcct aaaattttggtctcacatgaggaggttgggaaaaggaaaagaggaagacctgctggtggt acaagcaatagaaaaggaaaaacaactgtggcacaagctcgaagaacacgagcatgtact ggaaagaagcctgctaaaatttgtgataatgaatcagatgaaagtgggtctcacgacgag aagacttgcagggaagaaatcaaaattagagaaggaaataacaaaatgtcatgtaaggaa agttcagaaatccaagagactaaaatggtacaagacactgaatcatcatatagaggcaag gcagctgaggaagaagttgaaaaagatgttagatatgaagagtacaatatagttcctaat attgagctgattgaaacacatagaatccaagacagtgagaggcctgaaaaattcgaagtt atgatcgatcctgttcaagccatgttgttggacatgattccgagccttggagtgaagaaa attgagactacagatacaattcttgaagatgagaaactgctcttggatcccaatacagag cctacaaagaaaaagaaagtcagctacaaggacgttgctggtgagcttctgaaggattgg taa

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