Rahnella aquatilis HX2: Q7S_05325
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Entry
Q7S_05325 CDS
T01850
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
raa
Rahnella aquatilis HX2
Pathway
raa03030
DNA replication
raa03410
Base excision repair
raa03420
Nucleotide excision repair
raa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
raa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q7S_05325 (ligA)
03410 Base excision repair
Q7S_05325 (ligA)
03420 Nucleotide excision repair
Q7S_05325 (ligA)
03430 Mismatch repair
Q7S_05325 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
raa03032
]
Q7S_05325 (ligA)
03400 DNA repair and recombination proteins [BR:
raa03400
]
Q7S_05325 (ligA)
Enzymes [BR:
raa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q7S_05325 (ligA)
DNA replication proteins [BR:
raa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q7S_05325 (ligA)
DNA repair and recombination proteins [BR:
raa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q7S_05325 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q7S_05325 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q7S_05325 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q7S_05325 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AFE57317
LinkDB
All DBs
Position
1151721..1153742
Genome browser
AA seq
673 aa
AA seq
DB search
MATIEEQISQLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELVTADSPTQ
RVGAAPLSAFEQVRHRVPMLSLDNVFDEESYLAFYKRVQDRLKTAEALTFCCELKLDGLA
VSLLYENGELVQAATRGDGTTGENITANVRTIRAIPLRLHGDNIPERLEVRGEVFMPQAG
FEAMNDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHF
ARLQQFKAWGLPVSDRVRLCTGSEEVLAFYRQVEADRPSLGFDIDGVVVKIDSLDIQETL
GFVARAPRWATAFKFPAQEQITLVKDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVLDERPEDAREVVFPTHCPVCHSDVERVEG
EAVARCTAGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVKTPADLFRLTAG
KLTGLDRMGPKSAQNVVSALEKAKETTLARFLYALGIREVGEATAANLAAHYGSVEALKA
ADIESLKGVQDVGDVVAKHVVNFLSEEHNQQVIDELLSPEINIHWPEVQVIVPEEIDSPF
AGKTVVLTGSLSILSRDDAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIE
VIDEAEMIRLLGE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggccactatcgaagaacaaatcagtcaattacgcactcagttgcgccatcacgaatat
cagtatcacgttctggatgcaccggaagtgccagatgccgagtatgaccgcttaatgcgc
gaattgcgcgagctggaaaccgcgcatcctgagctggtcaccgcggattccccgacgcag
cgcgtgggggcggcaccgctttctgcatttgaacaggtcaggcatcgggtaccgatgtta
tcgctggacaacgtatttgatgaagaaagctatctggcattttataaacgcgtgcaggat
cgcctgaaaaccgctgaagcactgacgttctgctgcgagctgaaacttgatggtctggcg
gtgagcctgttgtatgaaaatggcgaactggtgcaggctgccacgcgtggcgatggcacg
accggtgagaacatcaccgcgaacgtacgcaccatccgcgcgattcctctgcgtctgcat
ggcgacaacattcctgagcgccttgaagtgcgtggtgaggtgtttatgccacaagcgggc
tttgaagcgatgaacgacgaagcgcgtcgtacgggagggaaagtgttcgctaacccgcgt
aatgccgccgccggttcgttacgtcagctcgatccgcgtatcaccgccaaacgtccgctg
accttcttctgctacggcgttggcctgctggaagggggtgaactgccgcgcagccacttc
gcccgcctgcaacagtttaaagcctggggtttaccggtcagtgatcgcgtccgcctgtgt
accggcagcgaagaagtgctggcgttttaccgtcaggttgaagccgaccgtccgtcactg
ggctttgatattgacggcgtggtagtgaaaattgactcgctggatattcaggaaacgctg
ggctttgtggcacgtgcgccgcgctgggcaacagccttcaaattcccggcgcaggaacaa
atcacgctggtgaaagacgtcgagtttcaggtagggcgtactggtgcgatcacgccggtc
gcacgtctggagccggttctggttgcgggcgtgatggtcagcaatgccacgctgcataac
gcagatgaaatcgaacgtcttgggctgcgtatcggcgataccgtgattgtccgtcgtgcc
ggagatgttatcccgcaggtggtgggcgtggtgctggatgagcgtcctgaagatgcccgc
gaagtggttttcccgacgcattgcccggtctgtcattctgatgttgaacgtgtcgaaggc
gaagccgtggcgcgttgtacggcgggtctgatttgtggtgcacagcgtaaagaagcgctg
aagcatttcgtctcccgccgggcgctggacgttgacggcatgggcgacaaaatcatcgat
cagttggtcgagaaagaatatgtcaaaacgccggcagatctgttccgtctgacggcgggc
aaacttaccggtctggaccgcatgggaccgaaatcggcgcagaacgtggtcagtgcgctg
gaaaaagccaaagaaaccacgctggcgagatttctgtatgcgctgggcattcgtgaagtg
ggcgaagccacggcggctaaccttgccgcgcattacggctcggttgaggcgcttaaagcg
gcagatattgaatcgctgaaaggcgttcaggatgtgggtgatgtcgtggcgaaacacgtg
gtgaatttcctgtcggaagaacataaccagcaggtcatcgacgagttgttaagccctgaa
atcaatattcactggccggaagtgcaggtcattgtaccggaagaaatcgacagtccgttt
gccggcaaaactgtggtgctgaccggttcgctgtcgattctttcccgcgatgacgccaaa
gaccgtctgactgcgctgggcgcgaaagtctccggcagcgtgtcgaagaaaaccgatctg
gtgattgccggtgaagcggcgggttccaagctggcgaaagcacaggaactgggcattgag
gtgatcgacgaggcggaaatgatccgtctgctgggtgaataa
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