Rahnella aceris ZF458: JHW33_16255
Help
Entry
JHW33_16255 CDS
T07163
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
race
Rahnella aceris ZF458
Pathway
race03030
DNA replication
race03410
Base excision repair
race03420
Nucleotide excision repair
race03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
race00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JHW33_16255 (ligB)
03410 Base excision repair
JHW33_16255 (ligB)
03420 Nucleotide excision repair
JHW33_16255 (ligB)
03430 Mismatch repair
JHW33_16255 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
race03032
]
JHW33_16255 (ligB)
03400 DNA repair and recombination proteins [BR:
race03400
]
JHW33_16255 (ligB)
Enzymes [BR:
race01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JHW33_16255 (ligB)
DNA replication proteins [BR:
race03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JHW33_16255 (ligB)
DNA repair and recombination proteins [BR:
race03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JHW33_16255 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JHW33_16255 (ligB)
MMR (mismatch excision repair)
DNA ligase
JHW33_16255 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JHW33_16255 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH
BssC_TutF
Motif
Other DBs
NCBI-ProteinID:
QQN33965
LinkDB
All DBs
Position
complement(3563529..3565226)
Genome browser
AA seq
565 aa
AA seq
DB search
MRQFIFLICLFPFAFSAYGKNMPSPDCPVWPSERLTQETHHLTAQLTQWDAAYHQSGSSP
IEDSVYDHLRQKQRLWLQCASQPVPELTVPASDDAEFTHPVAHTGLHKMKDKHAVANWMQ
GRKNLWVQPKIDGVAVSLIYRYGQLAALVSRGDGEKGQNWTVKAASIPAIPLHIPDMSPE
LILQGELYLLMTGHQQSADGGMNARSKVAGAMMRASASDLLKQTGIFIWSWPDGPTLMAD
HLEKLSQFGFPVVAQFTHAVSAVEDVEKWREDWFYQPLPFATDGVVVRQQEEPAGKYWQN
KPAVWAVAWKYPPARQLTDVTGITTTTGRSGKVTVILNLKPLRLDDKLVSKVSVGSVSRF
RQWDVLPGDQVAVALAGQGIPRLDEVTWRVSKRTEMPLPEPTRYNALSCFTPEPGCMQQF
LSRLIWLSGPEALDMAGFGGATWQKLLDASPADSLISWLSFNEKELAAVPGIGVKQAQKL
MAQIHLARERSFRRWLSAIGFPSFALGFAERQQSWNRLTQLTSRDWEMTEGIGRKRAAQV
FDFIHHPDVEILTEALRQAQLPAFR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcgccagtttatttttcttatctgcctgttcccttttgctttctctgcttacggtaag
aatatgccgtcgccagactgccctgtctggccatcagaacgcctgacacaggaaacccac
catctcaccgctcagctgacccagtgggatgcagcctaccatcagtctggcagcagcccg
atagaagattcggtctatgatcatttgcgtcagaaacaacgtctctggctacagtgtgcc
agccagccggtgcctgaactaacagtgccagcaagtgatgatgctgaatttacgcatccg
gtggctcataccggcctgcataaaatgaaagataaacatgctgtcgcaaactggatgcag
gggcgaaagaatctgtgggtgcagcccaaaatcgatggcgtggcggtgtcgctgatttac
cgttatgggcagttggccgcactggttagccgtggcgatggtgagaaaggacaaaactgg
acggtaaaagccgcgtcaattccggcgatcccgctgcatatcccggacatgagccctgag
ttgatattacagggcgagctttatctgttgatgaccggtcatcaacaaagtgctgatggc
gggatgaatgcaagatcaaaagttgcgggtgcaatgatgcgtgcttctgcttctgacctg
ctgaagcagacgggtatttttatctggtcatggccggatggacccacgcttatggctgac
cacctggagaagctgagccagttcggttttccggttgtggctcagttcacgcatgcggtg
agcgctgtcgaagatgtggaaaaatggcgtgaagactggttttaccagcctctgcctttt
gcgacggatggtgtggttgttcgtcagcaagaagagcctgccgggaaatactggcaaaat
aaacctgcagtctgggcggttgcctggaaatatccgcccgccagacagctcaccgatgtc
acgggtatcaccaccaccacaggacgaagcgggaaagtgaccgttatcctcaacctgaag
cccctgaggctggacgataagttagtcagtaaggtgagtgtgggatcggttagccggttc
agacaatgggatgttcttcctggcgatcaggtcgctgtcgcgctggccggacaggggatc
ccgcgccttgatgaagtgacatggcgggtaagtaagcgtacggaaatgcctttgcctgaa
ccaacgcgctataacgcactttcctgctttacgcctgaaccgggctgcatgcagcagttt
ctctcacgtctgatctggcttagcgggccggaagcgttagatatggcgggattcggcggg
gccacatggcaaaagttactcgatgcttccccggcggattctctgatcagctggttaagc
tttaacgagaaagagctggctgcggttccgggtatcggtgttaaacaggcgcaaaaactg
atggcgcaaattcatcttgcacgcgaaaggagcttccggcgctggctgtcagcaatagga
tttccttcttttgccctgggatttgcagaacgccagcaaagctggaacaggctgacacag
ctgacgtcccgcgactgggaaatgaccgaggggattgggagaaaacgggccgctcaggtt
tttgattttattcatcatccggacgttgagattttgaccgaagctctgaggcaggcgcaa
ttgcctgcattccgctaa
DBGET
integrated database retrieval system
