Rhizobium acidisoli: CO657_13075
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Entry
CO657_13075 CDS
T06438
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rad
Rhizobium acidisoli
Pathway
rad03030
DNA replication
rad03410
Base excision repair
rad03420
Nucleotide excision repair
rad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CO657_13075 (ligA)
03410 Base excision repair
CO657_13075 (ligA)
03420 Nucleotide excision repair
CO657_13075 (ligA)
03430 Mismatch repair
CO657_13075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rad03032
]
CO657_13075 (ligA)
03400 DNA repair and recombination proteins [BR:
rad03400
]
CO657_13075 (ligA)
Enzymes [BR:
rad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CO657_13075 (ligA)
DNA replication proteins [BR:
rad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CO657_13075 (ligA)
DNA repair and recombination proteins [BR:
rad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CO657_13075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CO657_13075 (ligA)
MMR (mismatch excision repair)
DNA ligase
CO657_13075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CO657_13075 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
RNA_ligase
FdhE_central
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QAS78938
UniProt:
A0AAE5TXA9
LinkDB
All DBs
Position
complement(2638927..2641083)
Genome browser
AA seq
718 aa
AA seq
DB search
MPTEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEVQ
FPELIREDSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSEMPADTQFGMVQAFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVV
YKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNSGERIRPEDHDIREGDTVIVQRAGDVIPQILDVVMEKRT
ADARSYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFEHEDASLQIRTAPEIFTLEKRQQASLTKLENIDGFGKVSVGKLYAAI
DERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFAMAMKEAAPLSGDAWNDLNAIE
GIGEVVARAMVEFYKEPRNVEVITRLIEEVTPQQAEQPVTTGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccgaaggttccgccgtcgacacgttgacgatcgaagaggctgccgccgagctt
gagcggctggcaaaggagatcgcgcatcacgatgcgctctaccatggcaaggaccggccg
gagatttcggatgcggattacgacgcgctgaagcgccgcaacgacgcactggaagtgcag
tttcccgagctgatccgagaggatagcccgtcgcggcgggtgggtgctgcgccctccgtc
accttttcgcccgtcgtccatgcgcgaccgatgctgtcgctcgacaacacgttttcgcag
gaggacgtgcaggatttcgtcgccagcgtctatcgcttcctcggccgcctgccggaccag
tcgatcgcctttaccgccgagccgaagatcgacggtctgtcgatgtcgatccgttacgag
aacggcaggctggtgacggcagcgacgcgcggtgacggcacgacgggggagaatgtcacc
gccaacattcgcactattgccgaaatccccaacgagctgccaaagggcgtgcccgcggtg
gtggagatccgcggcgaggtctatatggccaagagcgactttctggcgctgaaccgccag
atggaggcggagggcaaacagacctatgtcaatccgcgcaataccgccgccgggtcgctg
cgccagctcgacgccaaggtgacggccagccgcaagctgaaattcttcgcttatgcctgg
ggtgaaatgtcggaaatgcccgccgacacccagttcgggatggtgcaggctttcaaggat
tggggttttccggtgaacccgctgatgaagcggctgaattcggttgccgacattctggcg
cattacgacgagatcggtctggaacgcccggatctcgactacgacatcgacggcgtcgtc
tacaaggtcgacagcctcgagctgcaggcccgtctcggcttccgttcgcgttcgccgcgc
tgggcgacggcgcacaaatttccggccgaacaggccttcaccgaggtcgagaaaatcgag
atccaggtcggccgcaccggcgcgctgacgccggtggcgcgactgaagccgatcaccgtc
ggcggcgtcgtcgtcaccaatgcgacgctgcataacgaggactacatcaagggtatcggc
aatagcggcgagcgcattcggcctgaagatcacgatatccgcgaaggcgataccgtcatc
gtccagcgtgccggcgacgtcattccgcagatcctcgacgtggtgatggagaaacgcacg
gccgacgcccggtcgtacgaatttccgaaaacctgcccggtctgcggttcgcatgcggtg
cgcgaggtcaacgagaagaccggcaagatggattctgtgcgccgatgcaccggcggcttc
atctgccgggcacaggcgaccgagcatctgaagcacttcgtctcgcgcaacgccttcgat
atcgaggggcttggatcgaagcagatcgactttttcttcgaacacgaggatgcgtcgctg
cagatccgcaccgcgcccgaaatcttcacgctggagaagcgccagcaggcttcgctgacc
aagctggaaaatatcgacggcttcggcaaggtcagcgtcggcaagctttatgcggcgatc
gacgaacggcgcagcattgcactccaccgcttcatctacgcgctcggcatccgtcatgtc
ggcgagaccacggcaaagctgctggcgcgctcctatggcacttacgaagcctttgcgatg
gcgatgaaggaggcggcaccgctttccggcgacgcctggaacgatctcaacgccatcgag
ggcatcggcgaggtggtggcgcgcgccatggtcgaattctacaaggagccgcgcaatgtc
gaggtgatcacccggctcatcgaggaagtgacgccccagcaggccgaacagccggtaacg
accggcagtccggtggccggcaagaccgtggtctttaccggctcgctggaaaaattcacc
cgcgacgaggcgaaggcgagggcggaaagcctcggcgccaaggtggcgggatcggtctcc
aagaagaccgacatcgtcgtcgccggccccggcgctggctccaagctcgataaggcgcgc
gaactcggcgtgcagacgatggacgaggacgagtggctggcgctgatcagcgggtga
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