Riemerella anatipestifer RA-CH-1: B739_0264
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Entry
B739_0264 CDS
T02331
Name
(GenBank) NAD-dependent DNA ligase (contains BRCT domain type II)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rag
Riemerella anatipestifer RA-CH-1
Pathway
rag03030
DNA replication
rag03410
Base excision repair
rag03420
Nucleotide excision repair
rag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B739_0264
03410 Base excision repair
B739_0264
03420 Nucleotide excision repair
B739_0264
03430 Mismatch repair
B739_0264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rag03032
]
B739_0264
03400 DNA repair and recombination proteins [BR:
rag03400
]
B739_0264
Enzymes [BR:
rag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B739_0264
DNA replication proteins [BR:
rag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B739_0264
DNA repair and recombination proteins [BR:
rag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B739_0264
NER (nucleotide excision repair)
GGR (global genome repair) factors
B739_0264
MMR (mismatch excision repair)
DNA ligase
B739_0264
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B739_0264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Auto_anti-p27
5_3_exonuc
RNA_lig_T4_1
Dna2
DNA_pol_lambd_f
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AFR34871
UniProt:
J9QSQ0
LinkDB
All DBs
Position
280645..282654
Genome browser
AA seq
669 aa
AA seq
DB search
MLQEDIRRRIENLRETLHQHNYNYYVLDTPSISDYEFDVMLEELKNLELAHPEFADDNSP
TQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSLDTTDIEYVAELKYDGA
SISILYENGAFKQAVTRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEIYLTKKH
FNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQVVAEDTPVKTHWEL
LEQTKDWGFKTSQQAKLCKNLDEVKDFIDYWDKERQHLDFEIDGIVIKVNNLNQQQLLGY
TAKSPRWAMAHKFKAEKVETQLESISYQVGRTGAITPVANLKPVLLAGTIVKRASLHNED
IIRKLNLHTQDFVYVEKGGEIIPKIVGVNEEKRLPNATSVAYISHCPECHMPLVRNEGEA
AHFCPNETHCPPQVIGKMIHYVSRKALNIENLGSETIEQLFREGLISNIADFYTLTKEQL
LPLDRMAEKSAQNILDGIEKSKQIPFEKVLFGLGIKHVGETVAKKLVKNFRSIEGLKKAT
LEELTEVEDVGIKIAESLVNYFQNEENIEILDRLKSYGVQLEQEENTNTKVSDALEGKTF
LFTGKLSLFTREQAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLGTVTILDE
QEFLDLIDS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgctccaagaagatataagacgcagaatagagaaccttagagaaactctgcaccagcat
aattataattactatgttctagacactccaagtatttctgattatgaatttgatgtaatg
ctggaagaactaaaaaacctagagctagctcaccccgaatttgcagatgataactctccc
acacaaagagtaggtggtaacattaccaaaaatttccccacggtagaacaccgtcacaga
atgtattccttagataattcttataacttcgaagacctatccgactggcaaaacagactg
attaaaagtttagatacaaccgatatagaatatgtagcagaactaaagtatgatggagca
tctatttctatactttatgaaaacggtgcattcaagcaagcggttactagaggcgatggt
ttccaaggcgacgaaattacagccaatgtaaaaaccatttcggatattccgctaaaaatc
aaaggagaataccctaacaccttctacatcagaggagaaatatatctcacaaaaaaacac
ttcaacctcatcaataaagctagagaaaaagagggtttagacctttttatgaatcctaga
aataccgctagcggaagccttaaaatgcaggacagcacagaggtcagaaaaagaaaactt
tcggcagtactctaccaagtagtagcagaagacactcctgtaaaaacacactgggaacta
ctagaacaaactaaagactggggatttaaaacatctcaacaagctaaactctgtaaaaat
ctagatgaagtaaaagattttattgactattgggacaaagaaagacaacatcttgatttt
gaaatagacgggattgtaattaaagtcaataatcttaatcaacaacagctactaggctac
actgccaaatctccaagatgggcaatggctcataaatttaaagcagaaaaagtagaaaca
caattagaaagcatttcttatcaggtgggacgtacaggggccataacccctgtagctaat
ctaaaacccgtacttctggcagggacaatcgtaaaacgagcctctctacacaatgaggat
attataagaaaactcaatctacacactcaagactttgtttatgtagaaaaaggtggagaa
attattcccaaaatagtgggcgttaatgaagaaaaaagattgccaaatgcaacgtcggta
gcctacatcagccactgtccagagtgccatatgccactagtgagaaacgaaggagaagcc
gcacatttttgtcccaacgaaacccattgccctccacaagtaataggaaaaatgatacac
tatgtttctagaaaagctctcaatatagaaaatttaggctccgaaactatagaacaactt
ttcagagagggacttatttccaacattgccgatttttatactcttaccaaagagcagcta
ctccccttagatagaatggcagaaaagtctgcacaaaatattttggacggcattgaaaaa
tccaaacaaattccatttgaaaaagtgctatttggcttaggcattaagcacgtaggcgaa
actgtagccaaaaagttggtaaaaaacttccgttctattgaaggtttaaaaaaagccacc
ctagaagagcttacagaggtagaagatgtgggtataaagatagctgaaagcctcgtcaat
tattttcagaatgaagaaaatattgaaatattagatagattgaaatcttatggtgtccaa
ctagaacaagaagaaaacaccaacacaaaagtaagtgatgctttagaaggcaagaccttt
ttatttactggcaagttatctctgttcactagagagcaagccgaagaaatggtagagaaa
cacggtggcaaaaacatttctgccgtatccaaaaacctcaactatttggtagtgggcgaa
aaggcagggagcaaacttaaaaaagcccaaactctaggcactgtaaccatattagacgaa
caagaatttttggatttaatagatagttaa
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integrated database retrieval system
