Roseibium aggregatum: QUB73_09835
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Entry
QUB73_09835 CDS
T11280
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ragg Roseibium aggregatum
Pathway
ragg03030
DNA replication
ragg03410
Base excision repair
ragg03420
Nucleotide excision repair
ragg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ragg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QUB73_09835 (ligA)
03410 Base excision repair
QUB73_09835 (ligA)
03420 Nucleotide excision repair
QUB73_09835 (ligA)
03430 Mismatch repair
QUB73_09835 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ragg03032
]
QUB73_09835 (ligA)
03400 DNA repair and recombination proteins [BR:
ragg03400
]
QUB73_09835 (ligA)
Enzymes [BR:
ragg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QUB73_09835 (ligA)
DNA replication proteins [BR:
ragg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QUB73_09835 (ligA)
DNA repair and recombination proteins [BR:
ragg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QUB73_09835 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QUB73_09835 (ligA)
MMR (mismatch excision repair)
DNA ligase
QUB73_09835 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QUB73_09835 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WJS04552
LinkDB
All DBs
Position
2151589..2153742
Genome browser
AA seq
717 aa
AA seq
DB search
MTDTSFAQTDIDALTQEEAQVELKRLAAEIAEHDRRYHQEDDPVISDADYDALRRRNASI
EARFPNLILEDGPSAQVGAAPASGFGKITHRVPMLSLDNAFNDDDVRDFVGRVRRFLKFD
PLMGALAVTAEPKIDGLSLSLRYENGTLVYAATRGDGTTGENVTENAKTIKDIPEKLSGT
VPGVVEVRGEVYMAHKDFQALNERMAANGGKVFANPRNAAAGSLRQLKSEITASRPLRFF
AYAWGEMSELPEDTQFGMVKQLEAWGFQVNPLMKRCETVEELLGVYHGIEESRAQLDYDI
DGVVYKVDRLDLQERLGFVSRSPRWAIAHKFPAEQAYTILNDIEIQVGRTGALTPVAKLE
PITVGGVVVSNATLHNEDYIKGIGQDGESIRGGKDLRIGDTVKIQRAGDVIPQIVDIDLD
KRPDGAEAFEFPTVCPACGSHAVREEKEKTGRRDAVRRCTGGLICPAQATEKLKHFVSRN
AFDIEGFGDKQVDAFYKEGLVMAPADIFTLEERDKRSLTKLRNREGWGAVSAKNLFEAIN
ARREIDLHRFIFALGIRHVGEGNAKLLARAYGSWAVFYAAMKAAHDTAGEAWTELNDIDG
IGHIVAEALAEFFAEQHNLDQLDALLVEVSPKDAEKINASGSPVAGKTVVFTGSLERMTR
DEAKAMAERFGAKTAGSVSKKTDLVVAGPGAGSKLKKAQELEIEVISEDDWFDLVGA
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgactgacacttccttcgcccaaaccgacatcgacgccctgacgcaggaggaagcacag
gtcgagctgaaacggctggcggcggaaatcgccgagcatgaccgccgctatcaccaggaa
gatgacccggtgatctcggatgcggactatgacgccctgcgccggcggaacgcgtccatc
gaggcccggtttccgaatctcattcttgaagatggtccctctgcgcaggtgggggcggcc
ccagcgtccggttttggcaagattactcaccgggtgcccatgctgtcgctggacaatgcc
ttcaacgatgacgacgttcgggatttcgtcggccgcgtgcgccggtttctgaaattcgat
ccgctgatgggggctctggcagttaccgcggagccgaagatcgacggtctgtcgctgtct
cttcggtatgaaaacggcactctggtttacgccgcaacgcgaggtgacggcaccacaggt
gaaaacgtcaccgagaacgcgaagacgatcaaggatattccggagaagctgtccggcacg
gtgccgggtgtcgttgaagtgcgcggcgaagtctatatggcgcacaaggattttcaggcg
ctgaacgagcgcatggcagccaatggcggcaaggttttcgccaacccgcgcaacgcggcg
gcgggctcgttgcgccaattgaaatccgaaatcacggcctcccgcccgctgcggttcttc
gcttatgcctggggcgagatgagcgagctgccggaagatacccagttcggcatggtcaag
cagctggaagcctggggctttcaggtcaatccgctgatgaaacgctgtgaaaccgtggaa
gagcttctcggggtctatcacggcatcgaggaaagccgtgcccagctcgattatgatatc
gatggtgtggtctacaaggtcgaccggctagacctgcaggaacgcctcggctttgtctcg
cggtcaccccggtgggcgatcgctcacaagttcccggccgaacaggcctacaccatcctc
aacgacatcgagatccaggttggccgaacaggtgccctgacgccggttgccaagctggag
ccgatcacggtgggcggtgtcgtcgtttcaaacgcgaccctccacaacgaagactatatc
aagggtattggccaggacggagagtcgatccgtggcggcaaggatcttcgcatcggtgac
acagtgaagatccagcgtgccggcgacgtcattccgcagattgtcgatatcgatctggac
aaacgccccgatggggcggaagccttcgagtttccgactgtctgccccgcctgcggtagc
cacgcggtgcgcgaggaaaaggaaaaaaccggccgccgcgatgccgtgcgccgctgcacc
ggcggtctgatctgcccggcccaggcaacggaaaagctcaagcatttcgtctcgcgcaat
gccttcgacatcgaaggcttcggcgacaagcaggtcgacgccttctacaaggaaggcctt
gtgatggcaccggcggacatcttcacgctggaggagcgggacaagcgctctctcaccaag
ttgcgcaaccgggaaggctggggggccgtttcggcgaagaaccttttcgaggcaatcaac
gcgcggcgagagattgaccttcatcgtttcatcttcgccctgggcatccgtcacgtgggc
gagggcaacgccaagcttctggcacgtgcctatggctcctgggcggtgttctatgcagcc
atgaaggcggcgcatgacacggcgggcgaagcctggacagagctcaatgacatcgacggc
attggccatatcgttgccgaggcgctggcggagttctttgccgagcaacacaatctcgac
caactcgacgcacttctggtcgaggtatcacccaaggacgctgaaaagatcaacgcttcc
ggctcgccggtcgcaggcaagacagtggttttcaccggctcgctggaacgaatgacccgc
gacgaagccaaggccatggctgaacgctttggtgccaagacggcaggttccgtctcgaaa
aagaccgacctggtggtggccggtcctggtgctggttcaaagctgaaaaaggcgcaggag
ttggagatcgaggttatttccgaggatgattggttcgatctggtgggagcctga
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integrated database retrieval system
