Raineyella fluvialis: Rai3103_13385
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Entry
Rai3103_13385 CDS
T06259
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rain
Raineyella fluvialis
Pathway
rain03030
DNA replication
rain03410
Base excision repair
rain03420
Nucleotide excision repair
rain03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rain00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rai3103_13385 (ligA)
03410 Base excision repair
Rai3103_13385 (ligA)
03420 Nucleotide excision repair
Rai3103_13385 (ligA)
03430 Mismatch repair
Rai3103_13385 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rain03032
]
Rai3103_13385 (ligA)
03400 DNA repair and recombination proteins [BR:
rain03400
]
Rai3103_13385 (ligA)
Enzymes [BR:
rain01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Rai3103_13385 (ligA)
DNA replication proteins [BR:
rain03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rai3103_13385 (ligA)
DNA repair and recombination proteins [BR:
rain03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Rai3103_13385 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rai3103_13385 (ligA)
MMR (mismatch excision repair)
DNA ligase
Rai3103_13385 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rai3103_13385 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
HHH
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QGF24476
UniProt:
A0A5Q2FJI4
LinkDB
All DBs
Position
2928585..2930780
Genome browser
AA seq
731 aa
AA seq
DB search
MGLVTEQRPDPAAPDTVEPARADERTRERHAALATEITEHRYRYYVLDAPTVSDGEFDTL
MRELEGLEERFPELRTPDSPTQQVGAAPSATFAPVQHLQPMTSLDNVFNQEELFAWVDRT
YDRLGGRPGEGAFVCELKIDGLAVDLVYENGVLVRAATRGDGRVGEDVTANVRRIEAIPH
TLVSRAGHPVPALLEVRGEVYLSLEQFTRINEELVAAGRAPFANPRNSAAGSLRQKDPQV
TASRRLGFTSHGWGATSDDPGTRLELARQSHAYEVLADFGLPVSQYSRVVDTKEEIWAFV
EEIAGRRHDFVHEIDGAVVKVDERALQDRLGFTSRAPRWAIAYKYPPEEVTTKLLDIRVN
VGRTGRVTPYAVMEPVVVAGSTVAQATLHNATEVVRKGVLIGDTVVLRKAGDVIPEVVGP
VADLRDGTERAFVMPTHCPVCGTALAYEKEGDADIRCPNQRSCPAQLRERLFHLASRDAL
DIEVLGWQGADALLAAGLLKDEGDLFDLTADDLARTSFFTRASKAKERAQGAGERVLSAN
GKRLLENLETAKTRPWAKFLVALSIRHIGKGNAPDIAAAFPTVEALRDATDEEFDAVEGI
GPSIAAAIRDWFDTDWRVDIVRKWQAAGCVLGTYGQPSPTGPQVPQTLAGLTVVITGTMP
GYSRDEAQEAIVVRGAKAAGSVSKKTDYVVVGEGAGSKADKARALGRPIVAAQDFQRFLD
EGPSAVALLGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
ttgggcctcgtgaccgaacagcgcccggatcccgccgcccccgacaccgtcgagcccgcc
cgggccgatgaacggacccgggaacgacacgccgccctggcgaccgagatcaccgagcac
cgttaccgctactacgtgctcgacgcgccgaccgtctccgacggcgagttcgacaccctg
atgcgtgagttggagggcctcgaggagcgtttcccggagctgcggactcccgattcgccc
acccagcaggtgggggccgccccatcggcgaccttcgcacccgtgcagcacctgcagccg
atgaccagcctggacaacgtcttcaaccaggaggagttgttcgcctgggtcgaccgtacg
tacgaccggctcgggggacgcccgggggagggggcgttcgtctgcgagctgaagatcgac
gggctggccgtcgacctggtctacgagaacggtgtcctggtccgggcggccacccgaggt
gacggccgggtcggtgaggacgtgacggccaatgtccggcgcatcgaagcgatcccgcac
accctggtgagccgtgccggtcaccccgtaccggccctgctcgaggtgcgtggggaggtc
tacctgagcctggagcagttcacccggatcaacgaggaactcgtcgcggccggccgggcg
ccgttcgcgaatccccgcaacagcgcggccggatcgctgcggcagaaggacccgcaggtc
acggcctcgcgccggttggggttcacgtcgcacggctggggtgccacctccgatgacccg
gggacccggctcgagctggcccgtcagtcccacgcctacgaggtgctggcggacttcggc
ctgccggtgagccagtactcccgcgtggtcgacaccaaggaggagatctgggcgttcgtc
gaggagatcgccgggcgtcgccacgacttcgtccacgagatcgacggcgccgtggtcaag
gtcgacgaacgtgcgctgcaggaccgcctcggtttcacctcccgggcgccccgctgggcg
atcgcctacaagtacccgccggaggaggtgacgacgaagctgctcgacatccgggtcaac
gtcgggcgcaccggtcgcgtcacgccctacgcggtgatggaaccggtggtggtcgccggc
tccaccgtcgcccaggcgacgctgcacaacgccaccgaggtggtccgcaagggtgtgctg
atcggcgacaccgtggtgctgcgcaaggccggagacgtgatcccggaggtggtcggtccc
gtcgccgacctccgggacgggaccgagcgggcgttcgtgatgcccacgcactgcccggtc
tgcggcaccgccctggcgtacgagaaggaaggggatgccgacatccgctgtcccaaccag
cggtcctgcccggcgcagctgcgggagcggctcttccacctggcctcgcgcgacgccctc
gacatcgaggtgttggggtggcagggcgccgatgccctgctcgccgccgggttgctcaag
gatgagggggacctcttcgacctgacggccgacgacctggcgcggacgtccttcttcacc
cgcgcgagcaaggccaaggaacgggcccagggggcgggggagcgggtgctgtcggcgaac
ggcaagcggttgctggagaacctggaaaccgcgaagacccggccctgggccaagttcctt
gtcgcgttgtcgatccgccacatcggcaagggcaacgcaccggacatcgccgcagcgttc
ccgaccgtcgaggcgctgcgtgacgccacggacgaggagttcgacgccgtggagggcatc
gggccctccatcgccgccgcgatccgcgactggttcgacaccgactggcgggtcgacatc
gtgcgcaaatggcaggccgccggctgcgtgctggggacgtacgggcagccgtcgccgacc
ggtccacaggtgccccagacgttggccggactgacggtggtcatcaccgggaccatgccg
gggtacagccgcgacgaggcccaggaagccatcgtcgttcgcggcgccaaggccgccggc
tcggtgtcgaagaagaccgactacgtggtggtgggcgagggcgccgggtccaaggcggac
aaggcccgggccttgggccgaccgatcgtggcggcgcaggacttccagcggttcctggac
gagggaccctccgcggtggcgctgctcggcgagtag
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