KEGG   Hominimerdicola alba: Rumal_1735
Entry
Rumal_1735        CDS       T01387                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ral  Hominimerdicola alba
Pathway
ral03030  DNA replication
ral03410  Base excision repair
ral03420  Nucleotide excision repair
ral03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ral00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Rumal_1735
   03410 Base excision repair
    Rumal_1735
   03420 Nucleotide excision repair
    Rumal_1735
   03430 Mismatch repair
    Rumal_1735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ral03032]
    Rumal_1735
   03400 DNA repair and recombination proteins [BR:ral03400]
    Rumal_1735
Enzymes [BR:ral01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Rumal_1735
DNA replication proteins [BR:ral03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Rumal_1735
DNA repair and recombination proteins [BR:ral03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Rumal_1735
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Rumal_1735
   MMR (mismatch excision repair)
    DNA ligase
     Rumal_1735
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Rumal_1735
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase Nlig-Ia BRCT HHH_2 HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 RNA_ligase Auto_anti-p27 DNA_ligase_A_M RNA_pol_A_CTD PGRL1_N DUF4796_N
Other DBs
NCBI-ProteinID: ADU22233
LinkDB
Position
1989500..1991479
AA seq 659 aa
MSEKESAKKRIDELVEILNYHSRLYYVEDRNEISDYEYDMLQNELKKLEAANPDLIRKDS
PTQRVGGEAVSGFEKVTHKVQMGSLQDVFSFDEVREFVDRVRESVSDPVFVVEPKIDGLS
VSLEYHDGQLTVGSTRGDGFVGENVTENLKTVRSIPVTIDSSLPMIEVRGEVYMPRNVFL
SLIKEQEDNDEQPFKNPRNAAAGSLRQKDPKIAAKRKLDIFVFNVQQVDGKELTAHKQSL
DYLKELGFKTVPDYKQVSTSDEIIARINEIGESRFDLPYDIDGVVIKVDDFKHRDILGAT
AKVPKWAVAYKFPPEEKNTKLIDIELNVGRTGAVTPVAVFEPVFLAGTQVSRATLHNQDL
IIEKNINIGDTIRVRKAGDIIPEVLGSVEKNSEGAFMLPDECPVCHTKLVKSEDEAAVRC
PNVECPAQIFRSIVHFASKGAMNIDGLGPQIVRLLLDNKLITSVADLYNIKEDDLLALDS
FKEKSAHNLVTAIEKSRSVSLDRLIFGLGIRNIGQASAKLLCAKFGGLDSIMSATAEEIS
GIDGFGVVMAQSVYNAFHEEHMIALIQRLKECGVNTEYEKVQQDDRFAGKTFVLTGTLPT
LKRNDAKELIEKFGGKASGSVSKKTDFVLAGEEAGSKLTKAQELGVKIISEEEFMEMIK
NT seq 1980 nt   +upstreamnt  +downstreamnt
atgtctgaaaaggaaagcgcaaaaaaaaggatagatgagctggtcgaaatcctcaattat
cattcaaggctttattatgtggaagacaggaacgagatctccgattatgaatatgatatg
cttcagaatgagcttaaaaagcttgaagcggcaaaccctgaccttatacgcaaggacagc
cctactcagcgtgtaggcggtgaagctgtttctggctttgagaaagttacccataaagtt
cagatgggttctttgcaggacgttttttcctttgatgaggtacgagagttcgttgacagg
gtcagggagagtgtaagcgatcctgtattcgtagttgaacccaaaatagatggcctgtcc
gtttctctggaatatcatgacggtcagctgacagtaggttctactcgcggtgatggattt
gttggagagaacgtaactgaaaatctcaaaactgtacgctcgattcctgttacgatagac
agttcccttccgatgatagaagtccgcggcgaggtatatatgcctcgaaatgtttttcta
agtcttatcaaagagcaggaggataatgacgaacagccttttaaaaatcccagaaatgca
gcagcagggtcactaaggcagaaagatcctaagatagcggctaaacgcaagcttgatata
tttgtttttaatgtacagcaggtcgatggcaaggaacttactgcacacaagcaatcgttg
gattatctgaaagaactggggttcaagacggttcccgactacaaacaagtgagcacttct
gatgagataattgctcgtataaatgagataggggagagcagatttgatcttccttatgat
attgatggcgtcgttataaaagttgacgatttcaagcatcgtgatattctcggtgcaacg
gcaaaagttcctaaatgggcagttgcttataaatttcctccggaagagaagaacacaaaa
cttatcgatatagaactgaatgtcggaaggaccggcgcagttacacctgtcgctgtattt
gaacctgtttttctggcaggtactcaggtatcacgtgcgacgcttcataatcaggatctt
ataatagaaaaaaatataaatattggtgatacaataagggtacgcaaggcaggtgatatc
attcccgaagttttaggctcggtcgaaaagaattcagaaggtgctttcatgcttcccgat
gaatgtcctgtatgtcatacaaagcttgtaaagtccgaggatgaagcagctgtgcgttgt
cctaatgttgaatgccctgcacagatattccgcagtatagttcattttgcctcaaaggga
gctatgaacatcgacggattaggtccgcagatagttcgtttgctgcttgacaataaatta
ataacttctgtggcagacctttacaacatcaaggaagatgatcttttggctcttgacagt
ttcaaggaaaagtcagcacataatcttgttactgctattgaaaaatcaagatcggtctcc
cttgacagacttatattcggtctgggtataagaaacataggtcaggcttcagcaaagctt
ctttgtgctaaatttggcggacttgacagtataatgtcagcaacagccgaggaaatatcc
ggtatcgacggattcggtgtggtcatggcacagagcgtctataacgcttttcatgaggag
catatgatagctttgattcaacgtctaaaagaatgtggagtaaataccgaatatgaaaag
gtacagcaggatgaccgctttgcaggaaaaacttttgttctgacaggtactcttcccaca
ttaaaaagaaacgatgccaaggaactcatagaaaagttcggtggaaaggcaagcggttct
gtttcaaaaaagacagactttgttcttgcaggtgaggaagccggcagcaagcttacaaag
gcacaggaacttggcgttaagatcatttccgaagaagaattcatggagatgataaagtaa

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