Rickettsia amblyommatis GAT-30V: MCE_07070
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Entry
MCE_07070 CDS
T01787
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ram
Rickettsia amblyommatis GAT-30V
Pathway
ram03030
DNA replication
ram03410
Base excision repair
ram03420
Nucleotide excision repair
ram03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ram00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCE_07070 (ligA)
03410 Base excision repair
MCE_07070 (ligA)
03420 Nucleotide excision repair
MCE_07070 (ligA)
03430 Mismatch repair
MCE_07070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ram03032
]
MCE_07070 (ligA)
03400 DNA repair and recombination proteins [BR:
ram03400
]
MCE_07070 (ligA)
Enzymes [BR:
ram01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MCE_07070 (ligA)
DNA replication proteins [BR:
ram03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MCE_07070 (ligA)
DNA repair and recombination proteins [BR:
ram03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MCE_07070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCE_07070 (ligA)
MMR (mismatch excision repair)
DNA ligase
MCE_07070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCE_07070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
TLN1-like_RS
Motif
Other DBs
NCBI-ProteinID:
AFC70203
UniProt:
H8K388
LinkDB
All DBs
Position
complement(1232099..1234168)
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIDLISEEKAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHL
ILENSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVYRIKNFLRLNEFAPIFC
EPKIDGLSFSAVYKNGVLTTGATRGDGYIGEDITANIKTIKNFPHKIDNVPEFLEVRGEI
YIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKEGGFNINEISKLASSEEEIFAFYEYLKTNREDLPYEIDGVVYKLNDFA
LQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIARKDVRIKDYVFLQRAGDVIPKIMGVDFDKRPNDAATFDTPLFCLSCNSKL
HYMPEDIIIRCDNGLHCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIF
FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA
REFGSYSNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI
LNIEDYKETREQSSLTNKIVVFTGSLPTISRAEAKATAEKLGAKVAAGLSSNTDLVVAGV
DAGSKLKKAKELNIKIIDEEEWLTLIKNV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgatttaatatctgaagagaaagcacaaaaattactagaagaactcgct
gataaaatagcagcgtataaccatgcttattatatagaagataatcctttagtttctgat
agcgagtatgatcagctatttaataccaatctcaagttagaacaaaaatttcctcattta
attttagaaaatagtcctagcaaaaaagtaggggctaaaatagcaaataaatttgctaaa
gttacgcatcaggtgcctatgttatctctcagtaatgcttttgatgagcaagatgtgaga
gattttgtatatcgtataaaaaatttcttacgccttaatgagtttgctcctatcttttgt
gaacctaaaatagacggtttgtctttttctgctgtttataaaaacggggtgcttacaacg
ggagctacaagaggtgacggatatatcggtgaagatataacagcaaatattaaaacaatc
aaaaattttcctcataaaatagataatgttccagagtttttagaagtacgaggggaaatt
tatattgaaaaacaagattttttaaatctaaataaagaacaagaagagcagggcaaggat
aaatttgccaatcctcgtaatgctgctgccggatcacttcgtcagcttgatgcttctatt
acggctaaaagaccgctcaaatattttgtatattcaggaggggtaactgaacagaatctt
gcttcttcacaagatcaattacttacaaaattaaaagaaggcggctttaacattaatgaa
atatctaaacttgcgagttctgaagaagaaattttcgccttttacgaatatctcaaaaca
aatagagaagatttaccttatgaaattgatggagtagtatataagctaaatgattttgca
ctgcaaaatagaatgggctttattgcacgaagtccacgctttgctaccgctcataaattt
cctgcaataataggacaaacaaagttactttctattactgtacaggtcggtagaactggt
acgttaacgccagtagccgaacttgaacccatagaaataggcggggtaactgttagcaga
gcaacattacataatttccaagaaattgcacgaaaagatgtgcggattaaggattatgta
ttcctgcaacgtgctggtgatgttattcctaaaatcatgggagttgattttgataaacgt
cctaatgatgcagcaacgtttgatactcctttattttgtctgtcatgcaattctaagttg
cattatatgcctgaagatattattatacgctgtgataatggccttcactgccctgctcag
aattatgagcgtatccgtcattttgtatcgaaaaatgctatggatattgaggggcttggg
cgtaagcaagttgagtttttaatagataagggattgattagtaatcctttagatattttc
tttttaaaagaaaaaaatgactctagcttagcaaaacttgaaaatatggatggatggggt
aaaaaatcagtagaaaatctttttaaaaatatagaaaaatcaaaaaacgttagtttgcca
agatttatatatgcattaggcataaggcatatcggtgaacaaaatgctaaattacttgct
agagaatttggcagctatagtaattttatagctcaaatggaattgcttagaacaaatgag
cctgatatttatcaaaaactaaacaatttagaaggaatcggtgataagattttagtagat
attattgatttttttgatgttaaagaaaatattgagcttatcaaaaaacttggtgaaata
ttaaatattgaagattataaagagactagagaacagagtagtttaacgaacaagatagta
gtatttaccggtagtttaccgacgatatctagagcggaagctaaagcaacagctgagaag
cttggggctaaagttgcagctggcttatcatcgaacacggatttagttgtagccggcgtt
gatgcaggcagtaaacttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttacgcttataaaaaatgtttaa
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