Rothia amarae: IDM48_08315
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Entry
IDM48_08315 CDS
T06930
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rama
Rothia amarae
Pathway
rama03030
DNA replication
rama03410
Base excision repair
rama03420
Nucleotide excision repair
rama03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rama00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IDM48_08315 (ligA)
03410 Base excision repair
IDM48_08315 (ligA)
03420 Nucleotide excision repair
IDM48_08315 (ligA)
03430 Mismatch repair
IDM48_08315 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rama03032
]
IDM48_08315 (ligA)
03400 DNA repair and recombination proteins [BR:
rama03400
]
IDM48_08315 (ligA)
Enzymes [BR:
rama01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IDM48_08315 (ligA)
DNA replication proteins [BR:
rama03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IDM48_08315 (ligA)
DNA repair and recombination proteins [BR:
rama03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IDM48_08315 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IDM48_08315 (ligA)
MMR (mismatch excision repair)
DNA ligase
IDM48_08315 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IDM48_08315 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
QNV39394
UniProt:
A0A7H2BI98
LinkDB
All DBs
Position
complement(1771453..1773645)
Genome browser
AA seq
730 aa
AA seq
DB search
MRQNERVTDEQNIPEAAPQGISEELKEHYAQLIEQVRASRQQYYVDDAPTISDAAYDAMY
RELEELEALHPEIVANDSPTQEVGGEVSTAFAPVVHLSRMYSLEDVFSIEELKAWFEKTE
ANATRIAGEKPQWLTELKIDGLAINLLYRKGKLVRAATRGDGTTGEDVTHNVLTIKSIPT
QLAGKDWPEEVEVRGEIFISSADFKKLNEGIVEEGRAPFANPRNAAAGSLRQKDAAVTAR
RPLSMFVHGIGAQTGLDIQTQAQTYDQLKEWGLPVSPYSKVLTTLDEILEFIEKYGEQRH
SLVHEIDGIVIKVNHFRTQNQLGYTSRVPRWAVAYKYPPEEVNTKLLDIQVNVGRTGRVT
PFGVMEPVVVAGSTVEMATLHNQDVVKAKGVLIGDTVVLRKAGDIIPEIVGPVVALRDGS
EREFVMPTECPSCGAPLAPGKEGDVDIRCTNPRTCPSQLRERIFYAAGRGAFDIEALGYE
AAKALTAPAEPQTPPLTSEAELFNLTAEDLAEVKIEREKKVKGQGTGVMENVPYFWTKPT
AKTPSKPTKNTENLLVQLEKAKSQPLWRVLVALSMRHVGPTAARALATEFGSMGAIRSAS
EERLANVDGVGAIIARSVIEWFSVDWHREIVDAWAASGVRMEDERDESIERNLEGLTIVV
TGTLEDFTRDSAKEAILVRGGKASGSVSKKTSYLVAGVSAGSKLDKAQQLGVKVLDEAGF
KELLENGPEQ
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgaggcaaaatgagagggtgactgatgagcaaaatatcccagaagcagctccccaaggt
atctccgaggagctgaaagaacactacgcccaactgattgagcaggttcgagcaagccgc
cagcagtactatgtggacgacgcccccaccatttccgacgctgcatacgacgccatgtat
cgggagttggaggagcttgaggctctgcacccagagattgttgcaaacgattctcccacc
caagaagttggcggtgaagtttccactgcattcgcaccggtggttcacctgagccgcatg
tattccctggaagatgttttctccattgaagagctcaaagcgtggtttgaaaaaactgaa
gcgaatgcaacccgtattgcgggggagaaaccccagtggctgaccgaactaaaaattgac
ggtttggctattaacctgctttaccgcaagggcaaactggtgcgcgcggcaacccgtgga
gacggcaccaccggtgaggatgttacccacaatgttctcaccatcaaatccatcccaacc
cagctggcaggcaaagattggcccgaagaagttgaagtccgcggtgaaatttttatttcc
tcagccgatttcaagaagctcaacgagggcattgtagaagaaggacgcgcaccctttgct
aacccccgcaacgctgcagcgggatccctgcgccaaaaagatgcggcggtgaccgctcgt
cgtccgctgtccatgtttgtgcacggtattggagctcagaccgggttagatattcagacc
caggctcagacctatgatcagttgaaagagtgggggctgccggtgagcccctacagcaag
gtgctgaccactctggatgaaatcctagaatttattgagaagtatggcgaacagcgtcat
tcactggtgcatgagattgacggcatcgtcataaaggtcaaccatttccgtacgcagaac
cagctggggtatacctcgcgtgttccccgctgggctgttgcctataagtacccgccggaa
gaagtcaataccaagctgttggatatccaggtaaatgtcggtcgtaccgggcgcgtgaca
ccctttggagtgatggagccggtagttgtagcgggctcaacggtagaaatggctacctta
cacaaccaggatgtggtgaaggctaagggtgtgctcatcggcgatactgtggttttgcga
aaggcgggggatatcatccctgaaatcgtggggcctgtagttgcgttgcgcgacggcagt
gagcgagagtttgtgatgcccaccgaatgccccagctgcggggcgcccctggcgccgggg
aaagagggtgacgtcgatatccggtgcaccaatcctagaacctgcccttcgcagctccgt
gagcgtattttttacgccgctggacggggagcttttgatattgaggctttggggtatgag
gcagctaaggctctaaccgctcctgctgagccccaaacaccaccgcttacgtcggaggca
gagctcttcaatctcaccgcagaggatcttgcagaggtcaagattgagcgggagaaaaag
gtgaagggtcaaggcaccggggtaatggagaacgttccctatttttggaccaagcccact
gctaagaccccctctaaaccgaccaagaatactgaaaatttgttggttcagttagagaaa
gcgaagagtcagccgctgtggcgggttcttgtggctctctctatgcgccatgtgggcccc
actgctgcgagagctttagcaaccgaatttggctctatgggcgcgattcgatccgctagc
gaggagcgtctggctaacgtcgacggcgtcggggcgattattgcgcgctctgtcatcgaa
tggtttagcgtagattggcatcgcgaaattgtggatgcttgggcggcatcgggcgtccga
atggaggacgaacgggacgaaagtatcgagagaaatcttgagggactgacgattgtagtc
acgggaactttggaggatttcacccgtgattcggcaaaagaagcgattttagtacgcgga
ggtaaggcatcgggctccgtctcgaaaaaaaccagctatctcgtagctggtgtctctgcc
ggttccaagctggacaaggctcaacaactgggagttaaggttctggatgaggcaggtttt
aaggagcttctagagaatggtcccgaacaatag
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