Riemerella anatipestifer ATCC 11845 = DSM 15868: Riean_1605
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Entry
Riean_1605 CDS
T01363
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ran
Riemerella anatipestifer ATCC 11845 = DSM 15868
Pathway
ran03030
DNA replication
ran03410
Base excision repair
ran03420
Nucleotide excision repair
ran03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ran00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Riean_1605
03410 Base excision repair
Riean_1605
03420 Nucleotide excision repair
Riean_1605
03430 Mismatch repair
Riean_1605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ran03032
]
Riean_1605
03400 DNA repair and recombination proteins [BR:
ran03400
]
Riean_1605
Enzymes [BR:
ran01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Riean_1605
DNA replication proteins [BR:
ran03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Riean_1605
DNA repair and recombination proteins [BR:
ran03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Riean_1605
NER (nucleotide excision repair)
GGR (global genome repair) factors
Riean_1605
MMR (mismatch excision repair)
DNA ligase
Riean_1605
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Riean_1605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Auto_anti-p27
5_3_exonuc
RNA_lig_T4_1
Dna2
BRCT_2
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
ADQ82762
UniProt:
E4TDA3
LinkDB
All DBs
Position
complement(1772317..1774326)
Genome browser
AA seq
669 aa
AA seq
DB search
MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFADNNSP
TQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSLDTTDIEYVAELKYDGA
SISILYENGAFKQAITRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEIYLTKKH
FNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQVVAEDTPVKTHWEL
LEQTKDWGFKTSQQAKLCKNLDEVKDFIDYWDKERQHLDFEIDGIVIKVNNLNQQQLLGY
TAKSPRWAMAHKFKAEKVETQLESISYQVGRTGTITPVANLKPVLLAGTIVKRASLHNED
IIRKLNLHTQDFVYVEKGGEIIPKIVGVNKEKRLPNATLVAYISHCPECHMPLVRNEGEA
AHFCPNETHCPPQVIGKMIHYVSRKALNIENLGSETIEQLFREGLISNIADFYTLTKEQL
LPLDRMAEKSAQNILDGIEKSKQIPFEKVLFGLGIKHVGETVAKKLVKNFHTIDGLKKAT
LEELTEVEDVGIKIAESLVNYFQNEENIEILDRLKSYGIQLEQEENTSAKVSNALEGKTF
LFTGKLSLFTREQAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLSTVTILDE
QEFLDLING
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtccctagacgatattaagcataaaatagaggaactaagagaagagctacatcaacac
aattataactattatgttttagatactcctagtatttcagactatgaatttgatatgatg
ctagaagagttgaaagaactagaattagcctaccctgaatttgcagataataattctcct
acgcaaagagtaggtggtaacattaccaaaaactttcccacggtggaacaccgccacaga
atgtattccctagataattcttacaactttgaagacctctccgactggcaaaaccgattg
attaaaagtttagatacaaccgatatagaatatgtagcagaactaaagtatgatggagcc
tccatttctatactttacgaaaacggagcttttaaacaagcaatcactagaggagatggt
tttcaaggcgatgaaattacagccaatgtaaaaaccatttcggatattccgctaaaaatc
aaaggagaataccctaacaccttctacatcagaggagaaatatatctcacaaaaaaacac
ttcaatctcatcaataaagctagagaaaaagagggtttagacctttttatgaatcctaga
aacaccgctagcggaagccttaaaatgcaggacagcacagaggtcagaaaaagaaaactt
tcggcagtactctaccaagtagtagcagaagacactcctgtaaaaacacactgggagcta
ctagaacaaactaaagactggggatttaaaacatctcaacaagctaaactctgtaaaaat
ctagatgaagtaaaagattttattgactattgggacaaagaaagacaacatcttgatttt
gaaatagacgggattgtaattaaagtcaataatcttaatcaacaacagctactaggctac
accgccaaatctccaagatgggcaatggctcataaatttaaagcagaaaaagtagaaaca
caattagaaagcatttcttatcaggtgggacgtactgggaccataacccctgtagctaat
ctaaaacccgtacttctggcagggacaatcgtaaaacgagcctctctacacaatgaggat
attataagaaaactcaatctacacactcaagactttgtttatgtagaaaaaggtggagaa
attattcccaaaatagtgggcgttaataaagaaaaaagattgccaaatgcaacgttggta
gcctacatcagccactgtccagagtgccatatgccactagtgagaaacgaaggagaagcc
gcacatttttgtcccaacgaaacccattgccctccacaagtaataggaaaaatgatacac
tacgtttctagaaaagctctcaatatagaaaatttaggctccgaaactatagaacaactt
ttcagagagggacttatttccaacattgccgatttttatactcttactaaagagcagcta
ctccccttagatagaatggcagaaaagtctgcacaaaatattttggacggcattgaaaaa
tccaaacaaattccatttgaaaaagtgctatttggtttaggcattaagcacgtaggtgaa
actgtagccaaaaaattggtgaaaaactttcatactattgacggactaaaaaaagctact
ttagaggaactcacagaagtagaagatgtaggcataaagatagccgaaagcctcgtgaat
tactttcagaatgaagaaaatattgaaatcttagataggctaaaatcttatggtattcaa
ctagaacaagaagaaaataccagcgcaaaagtaagtaatgctttagaaggcaagaccttt
ttatttactggtaagctatctctgttcactagagagcaagccgaagaaatggtagagaaa
cacggcggcaaaaacatttctgccgtatccaaaaacctcaactatttagtggtaggtgaa
aaagcaggaagcaaacttaaaaaagcccaaactctaagcacagtaaccatattggacgaa
caagaatttttagatttgataaatggctaa
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integrated database retrieval system
