Rhodococcus antarcticus: RHODO2019_04110
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Entry
RHODO2019_04110 CDS
T09186
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rant
Rhodococcus antarcticus
Pathway
rant03030
DNA replication
rant03410
Base excision repair
rant03420
Nucleotide excision repair
rant03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHODO2019_04110 (ligA)
03410 Base excision repair
RHODO2019_04110 (ligA)
03420 Nucleotide excision repair
RHODO2019_04110 (ligA)
03430 Mismatch repair
RHODO2019_04110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rant03032
]
RHODO2019_04110 (ligA)
03400 DNA repair and recombination proteins [BR:
rant03400
]
RHODO2019_04110 (ligA)
Enzymes [BR:
rant01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RHODO2019_04110 (ligA)
DNA replication proteins [BR:
rant03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RHODO2019_04110 (ligA)
DNA repair and recombination proteins [BR:
rant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RHODO2019_04110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RHODO2019_04110 (ligA)
MMR (mismatch excision repair)
DNA ligase
RHODO2019_04110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHODO2019_04110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
HHH_3
HHH_8
Motif
Other DBs
NCBI-ProteinID:
UZJ25646
LinkDB
All DBs
Position
831397..833544
Genome browser
AA seq
715 aa
AA seq
DB search
MSEESTGTVGGALRGQWAELAEEVRGHQFRYYVRDAPVLSDGQFDELLGRLAALEQAHPE
LRTADSPTQLVGGGFETGFAAVDHLERMLSLDNAFDADELRAWAGRVVADVGHEVDYVCE
LKIDGVALNLVYENGKLVRAATRGDGRTGEDVTLNARTIEDIPETLTGSGAFPVPELLEV
RGEVFFRLADFAALNASLVAEGKAPFANPRNSSAGSLRQKNPAVTARRRLGMICHGLGRR
TGFDPDSQAHAYEALAAWGLPISPQTRQVRGIDAVLEQVAYWGEHRHEPVHEIDGLVVKV
DEVALQRRLGSTSRAPRWAIAYKYPPEEATTTLLDIQVNVGRTGRVTPFAFMEPVLVAGS
TVSLATLHNAQEVVRKGVLIGDLVTIRKAGDVIPEVLGPVVDAREGRELRAFVMPTECPE
CGTTLAPAKEGDADLRCPNSRSCPAQLRERVFHVAGRGAFDIEALGYKSATALLAAGVIS
DEGDIFALTENDLLATDLFRTKAGVLSANGASLLRNLEAAKDQALWRVLVGLSIRHVGPT
AARALAGEFASLERIATAPEEELAAVDGVGPTIAQAVVEWFAVDWHRDLVAKWRSAGVRM
VDERDASVPRFLEGLSIVVTGSLSTLSRDEAKEAILERGGKAAGSVSKKTAFVVVGDAPG
SKYDKAVQLGVPILDAAGLTVLLAEGPDAARAVAQVPPEPEPEAAGPAVGEEESP
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaggagagcacgggcacggtcggtggcgcgctgcgagggcagtgggcggagctc
gccgaggaggtccgcgggcaccagttccgctactacgtgcgcgacgccccggtgctgtcc
gacggccagttcgacgagctgctcggccggctcgccgcgctcgagcaggcccaccccgag
ctgcgcaccgccgactcacccacccagctcgtggggggcgggttcgagaccggcttcgcc
gccgtcgaccacctcgagcggatgctgagcctggacaacgccttcgacgccgacgagctc
cgcgcgtgggccggccgggtggtggccgacgtcggtcacgaggtggactacgtgtgcgag
ctcaagatcgacggcgtcgcgctgaacctcgtgtacgagaacgggaagctcgtccgggcg
gccacccgcggcgacggccggaccggggaggacgtcaccctcaacgcccgcaccatcgag
gacatccccgagaccctcaccggcagcggcgcgttcccggtgcccgagctgctggaggtg
cgcggcgaggtgttcttccggctggcggacttcgcggcgctgaacgcctcgctggtcgcc
gagggcaaggcccccttcgcgaacccgcgcaactcctcggccggctcgctgcggcagaag
aaccccgccgtcaccgcgcgccgccggctggggatgatctgccacggcctcggcaggcgc
accgggttcgacccggactcccaggcccacgcctacgaggcgctggccgcgtgggggctg
ccgatctccccgcagacccggcaggtgcgcgggatcgacgccgtgctggagcaggtcgcg
tactggggcgagcaccgccacgagcccgtgcacgagatcgacgggctcgtggtcaaggtc
gacgaggtggccctgcagcgccgcctgggctccacctcccgggcgccgcggtgggcgatc
gcctacaagtacccgccggaggaggccaccaccacgctgctggacatccaggtcaacgtc
gggcgcaccgggcgggtcacccccttcgcgttcatggagccggtgctcgtggctgggtcc
acggtcagcctggccaccctgcacaacgcgcaggaggtggtccgcaagggcgtgctcatc
ggggacctcgtcaccatccgcaaggccggtgacgtcatcccggaggtgctcggcccggtg
gtcgacgcgcgggagggccgcgagctccgcgcgttcgtcatgccgacggagtgccccgag
tgcgggacgacgctggccccggccaaggagggcgacgcggacctgcgctgcccgaactcc
cgctcctgcccggcgcagctgcgcgagcgcgtgttccacgtcgccggtcgcggggccttc
gacatcgaggcgctgggctacaagtccgccaccgcactgctggccgccggggtcatctcc
gacgagggcgacatcttcgcgctgaccgagaacgacctgctcgccaccgacctgttccgc
accaaggcaggggtgctgtcggccaacggcgccagcctgctgcgcaacctcgaggcggcc
aaggaccaggcgctgtggcgggtgctggtgggtctgagcatccgccacgtcggccccacc
gcggcccgtgcgctggccggcgagttcgcctcgctggagcgcatcgcgaccgcgcccgag
gaggagctcgcggccgtggacggggtggggcccaccatcgcgcaggccgtcgtcgagtgg
ttcgccgtggactggcaccgtgacctcgtcgccaagtggcggtcggcgggggtgcggatg
gtcgacgagcgcgacgcgtcggtgccgcggttcctcgagggtctctcgatcgtcgtcacc
ggttccctgagcaccctgagccgggacgaggccaaggaggcgatcctcgagcgcgggggc
aaggcggccgggtcggtgtcgaagaagacggcgttcgtggtcgtgggcgacgcgccgggc
tcgaagtacgacaaggcggtgcagctgggggtgccgatcctcgatgccgcggggctcacc
gtgctgctcgcggagggtccggacgcggctcgtgccgtggcgcaggtgccgcccgagccc
gagcccgaggcggccggaccggccgtcggcgaggaggagtccccgtga
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