Raoultella sp. X13: DSD31_07015 Help Entry DSD31_07015       CDS       T05540                                  Name (GenBank) NAD-dependent DNA ligase LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism rao  Raoultella sp. X13 Pathway rao03030   DNA replication rao03410   Base excision repair rao03420   Nucleotide excision repair rao03430   Mismatch repair Brite KEGG Orthology (KO) [BR:rao00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     DSD31_07015    03410 Base excision repair     DSD31_07015    03420 Nucleotide excision repair     DSD31_07015    03430 Mismatch repair     DSD31_07015  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:rao03032]     DSD31_07015    03400 DNA repair and recombination proteins [BR:rao03400]     DSD31_07015 Enzymes [BR:rao01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      DSD31_07015 DNA replication proteins [BR:rao03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      DSD31_07015 DNA repair and recombination proteins [BR:rao03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      DSD31_07015    NER (nucleotide excision repair)     GGR (global genome repair) factors      DSD31_07015    MMR (mismatch excision repair)     DNA ligase      DSD31_07015   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       DSD31_07015 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 Nlig-Ia DNA_ligase_ZBD HHH PTCB-BRCT DUF2229 Prok-E2_C Motif Other DBs NCBI-ProteinID:  AXC29242 LinkDB All DBs Position 1441304..1443319 Genome browser AA seq 671 aa AA seqDB search MEPIEQKLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPDLITPDSPTQ RVGAAPLASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDDLIYCCELKLDGLA VSILYENGVLVQAATRGDGTTGEDITANVRTIRAIPLRLRGDNIPQRLEVRGEVFLPQAG FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGALTGGELPESHS GRLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPNLGFDIDGVVIKVDSLALQEQL GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSDRPEETREIVFPTHCPVCNSDVERVEG EAVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVHTPADLFRLTAG KLTGLDRMGPKSAQNVVNALEKSKATTFARFLYALGIREVGEATAAGLAAYFATIEALEQ ATIEELQKVPDVGIVVATHVFHFFAEENNRDVIAQLRAEGVNWPAPVVVNAEEIDSPFAG KTVVLTGSLSQLSRDDAKARLMALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI DEAEMLRLLGE NT seq 2016 nt NT seq  +upstreamnt  +downstreamnt atggaaccgatcgaacaaaaactaactgaactgcgaaccacgcttcgccatcatgaatat ctgtaccatgttatggataccccggagattcccgatgcggaatatgaccggttaatgcgc gaactgcgcgagctcgaagctcagcatccggatctgattacccctgattctccaacccaa cgcgtgggcgcggcgccgctggcgtcattcagccaggtccgccatgaggttccgatgctg tcgctggataacgtctttgatgaagagagcttccttgccttcaataagcgcgttcaggat cgactcaagagcagtgatgacctgatctattgctgtgagctaaagctggacgggctggcg gtcagcattttgtatgaaaacggcgtcctggttcaggcggcaacccgtggcgatggcacc accggcgaagatatcaccgccaacgtcaggacaattcgcgccatcccgttgagactgcgt ggcgacaatattccacaacggctggaagttcgcggcgaggtcttcttaccgcaggccggc ttcgaaaaaattaatgaagaggcccgccgtaccggagggaaagtgtttgctaacccacga aacgcggcggcaggctctctgcgtcagctcgatccgcgaattacggcgaagcgaccgctt actttcttttgttacggcgtgggcgcgctgactggcggtgagctgccggagagccattcc ggccgtctgcagcagtttaaggcatgggggctgccggttagcgaccgggtgacgctctgc cataccccagaggaagtgcttacttactaccgtaaagttgaagaagaccgtccgaattta ggttttgatattgatggtgtggtcatcaaagtcgattccctggcgcttcaggaacagctt ggatttgtggcccgtgcgccgcgctgggcggtggcgtttaagttcccggcgcaggagcaa atgacttttgtgcgcgacgtcgagtttcaggtagggcgtaccggagccatcacgccagtg gctcgcctggagccggtgcatgtggccggtgttctggtgagcaatgctactttgcacaac gccgatgaaatagagcgcctggggctgcgaattggcgataaagtggtgattcgccgcgcg ggggacgtgattcctcaggtcgtcaacgtcgtactctccgatcgcccggaggagacgcga gagatcgtcttcccgacccattgtccggtgtgtaattctgatgttgaacgggtcgaaggc gaggcggtaacgcgctgtaccggcgggttaatttgcggtgcgcagcgtaaggaagcgcta aaacattttgtctcccgccgcgcgttagatgtggagggcatgggggataaaattatcgac cagctggttgagaaagagtacgtccacactccggcagatctcttccgcttaaccgccggg aaactcaccggtctggatcgaatggggcctaaatcagcacaaaacgtggttaatgccctg gaaaaatcaaaagcaaccacctttgctcgtttcctctacgcattaggtattcgcgaggtc ggtgaagcaacggcagcggggctggcggcctatttcgccacgattgaagcgctggagcag gctactattgaggagctgcaaaaagtgccggatgtgggaattgtcgtggccacgcacgtc tttcacttctttgctgaagagaacaaccgcgatgtgatcgcgcagctccgcgcggaaggg gtcaactggcctgcgccggtggtggtcaatgccgaggagattgatagcccgtttgccggt aaaacggttgtcctgaccggcagtctcagccagctttctcgcgatgatgcgaaggcgcgg ctgatggcgctgggggcaaaagtcgccggcagcgtctcgaagaaaacggatctggtgatt gccggcgaagcggcgggctctaaacttgctaaagcgcaggagctgggcatcgccgtcatt gatgaagcagaaatgctgcggctgctgggagaataa

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