Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_4488
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Entry
Rahaq2_4488 CDS
T01770
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Pathway
raq03030
DNA replication
raq03410
Base excision repair
raq03420
Nucleotide excision repair
raq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rahaq2_4488
03410 Base excision repair
Rahaq2_4488
03420 Nucleotide excision repair
Rahaq2_4488
03430 Mismatch repair
Rahaq2_4488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
raq03032
]
Rahaq2_4488
03400 DNA repair and recombination proteins [BR:
raq03400
]
Rahaq2_4488
Enzymes [BR:
raq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Rahaq2_4488
DNA replication proteins [BR:
raq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rahaq2_4488
DNA repair and recombination proteins [BR:
raq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Rahaq2_4488
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rahaq2_4488
MMR (mismatch excision repair)
DNA ligase
Rahaq2_4488
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rahaq2_4488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH
H2TH_5
BssC_TutF
Motif
Other DBs
NCBI-ProteinID:
AEX54226
UniProt:
H2IYA0
LinkDB
All DBs
Position
complement(4775542..4777239)
Genome browser
AA seq
565 aa
AA seq
DB search
MRQFIFLICLFPFTFSASGKNMPSPECPVWPSERLTQEIRHLTAQLTQWDAAYHQSGSSP
IEDSVYDHLRQKQRLWLQCASQPVPELTVPVSDDAEFTHPVAHTGLHKMKDKHAVANWMQ
GRKNLWVQPKIDGVAVSLIYRYGQLAALVSRGDGEKGQNWTVKAASIPAIPLSIPDMSPE
LILQGELYLKMTGHQQRAEGGMNARSKVAGAMMRASASDLLKQTGIFIWSWPDGPTLMTD
HLEKLRQFGFPVVAQFTLAVSSVEDVAKWREDWFHQPLPFATDGVVIRQQEEPAGKYWQN
KPAIWAVAWKYPPARQLTDVTGITTTTGRSGKVTVILQLKPLRLDDKLISKVSLGSVSRF
RQWDVLPGDQVAIALAGQGIPRLDEVTWRVSERMEMPLPDPTRYNPLSCFTPEPGCMQQF
LSRLIWLSGPEALDMAGFGGATWQKLLDASPADSLISWLSFNEKELAAVPGIGVKQAQKL
MAQIHLARERSFRRWLSAIGFPSFALGFAERQQSWNRLKQLTSRDWEMTEGIGRKRAAQV
FDFIHHPDVEILTETLKQVQLPAFR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcgccagtttatttttcttatctgcctgttcccttttactttctctgcttccggtaaa
aatatgccgtcgccggaatgtcctgtctggccgtcagaacgactgacacaggaaatccgt
cacctcactgctcaactgactcaatgggatgcagcctaccatcagtccggcagcagcccg
atagaagactcggtctatgatcatttgcgtcagaaacaacgcctctggctacagtgtgcc
agccagccggtgcctgaactgacagtgccagtcagtgatgatgctgaatttacgcatccg
gtagcgcataccggcctgcataaaatgaaagataaacacgctgtcgcaaactggatgcag
gggcgaaagaatctgtgggttcagcccaaaatcgatggcgtggcggtgtcgctgatttac
cgttatgggcagttggccgcactggtaagtcgtggcgacggtgagaaaggacaaaactgg
acggtaaaagccgcttcaattccggcgatcccgctcagcattccggacatgagccctgag
ttgatattacagggcgagctttatctgaagatgaccggtcatcaacaacgtgctgagggc
gggatgaatgcaagatcgaaagttgcaggtgcaatgatgcgtgcctctgcttctgacctg
ttgaagcagacaggtatttttatttggtcatggccggacggacccacgcttatgactgat
catctggagaaactcagacagttcggttttccggttgtggctcagttcacgcttgcggtg
agctctgtcgaagatgtcgcaaaatggcgtgaagactggtttcatcagcctctgcctttt
gcgacggatggcgtggttattcgtcagcaagaagagcctgcggggaaatattggcaaaat
aaacctgcaatctgggcggtcgcctggaaatatccacccgccagacagctcaccgatgtc
acgggtatcaccaccaccacagggcgaagcgggaaagtgaccgttatcctacaactgaaa
cccctgaggctggacgataagttaatcagtaaggtgagtttgggatcggtcagccgcttc
aggcaatgggatgttcttcccggtgatcaggtcgctatcgcgctggccggacaggggatc
ccgcgcctggatgaagtgacatggcgggtaagtgagcgtatggagatgcctttgcctgat
ccaacgcgctataacccactttcctgctttacgcctgaaccgggctgcatgcagcagttt
ctctcacgtctgatctggcttagcgggccggaagcgttagatatggcggggttcggcggg
gccacatggcaaaagttactggatgcttccccggcggattctctgatcagttggttaagc
tttaacgaaaaagagctggctgcggttccgggtatcggtgttaaacaggcgcaaaagctg
atggcgcaaattcatcttgcacgcgaaaggagcttccggcgctggctgtcagcaatagga
tttccttcttttgccctgggatttgcagaacgccagcaaagctggaacaggttgaaacaa
ctgacgtctcgcgactgggaaatgactgaggggatcgggagaaagcgggccgctcaggtt
tttgattttattcatcatccggacgttgagattttgaccgaaactctgaagcaggtgcaa
ttgcctgcattccgctaa
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