Rhodamnia argentea (silver malletwood): 115750974
Help
Entry
115750974 CDS
T10595
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115750974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rarg03041
]
115750974
Spliceosome [BR:
rarg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115750974
Complex C
U5 SnRNP specific factors
115750974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
EF-G_D2
Ras
Septin
Motif
Other DBs
NCBI-GeneID:
115750974
NCBI-ProteinID:
XP_048133421
UniProt:
A0ABM3H9Z8
LinkDB
All DBs
Position
4:complement(17184422..17191296)
Genome browser
AA seq
988 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDLESGGEEEDEDLPDKRSEEPAESDGEDAAAGANGWITASN
DVDMENQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRNIKFEVGVKDS
STYVSTQFLIGLMSNPALVRNVALVGHLHHGKTVFMDMLVEQTHHISTFDVNNEKHMRYT
DTRIDEQERRISIKAIPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEIINNH
ISAASSIAGGVQVIDPVAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFASRLWG
DYYYHPDARVFRKKPPVSGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSN
AAYKLNVRPLLRLACSSVFGSASGFTDMLVHHIPSAKDAASKKVEHIYTGPEDSMIYKAM
EKCDPAGPLMVNVTKLYPKSDCSVFDAFGRVYSGEIQTGQTLRVLGEGYSPDDEEDMTVK
EVTKLWIYQARYRIPIAKAPPGTWVLIEGVDASIMKTATLCNVDYDEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFSETVVESSSMRCFAETPNKKNKITMVAEPLEKGLAEDIENGVV
SIDWKKKELGEFFQKKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNSVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSSFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPSYTVKAFLPVIESFGFET
DLRYHTQGQAFCLSAFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMMVELAQHAADHQYQMM
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcttgtacgacgagttcgggaactatatcgggcccgaaattgaatctgac
ctggagtctggaggcgaggaagaagatgaagacctcccggacaagcgcagtgaggagcct
gctgaatctgatggcgaggatgccgctgctggtgcaaatgggtggattactgcctccaat
gatgtcgacatggagaatcagattgttcttgccgaggataaaaagtattaccccactgcc
gaggaagtttatggtgaagatgttgagacgttggttatggatgaagacgagcaacctctc
gaacaaccgataatcaagcctgttaggaatataaagtttgaggttggtgtgaaggattct
tctacttatgtgtcgacccagttccttatcggtcttatgtcgaaccctgctttagttcga
aatgttgcacttgtgggccacttgcatcacgggaagacagtgttcatggacatgttggtt
gaacaaacacaccacatctctacatttgatgtcaacaatgagaagcatatgagatatacg
gatacaaggattgatgagcaggagaggaggatatcgattaaagccattccgatgtctctt
gtacttgaggatagtaattcaaaatcatacctctgtaacatcatggacacacctggacat
gtcaatttctctgatgaaatgactgctgctcttaggctcgctgatggagctgtgctgatt
gtggatgctgctgaaggggttatggtaaatacagaacgggccatccgccatgctatccaa
gagcgccttcctattgttgttgtgattaacaaagttgacagactgataacagagcttaag
ttgccaccaaaggatgcttatcacaagctaaggcataccattgaaataattaacaaccat
atttctgcagcctcttcgattgctggaggtgtccaggtaatagatccagttgctggaaat
gtttgttttgcaagtgctacagcagggtggtccttcactttgcagtcatttgctaaacta
tatgtcaaactccacggtatcccttttgatgccgataagtttgcttcccgtctttgggga
gattactactatcatccagatgccagggtgtttaggaaaaaacctccagttagtggaggg
gaaagatcgtttgtccaatttgtgcttgagcccctgtacaagatatacagtcaagtaatt
ggggagcataagaaaagtgtggaggcaactcttgcagaactaggggtcactctcagcaat
gccgcttacaagttgaatgtgagacctttgcttcggctagcttgcagttcagtttttggt
tcagcatcaggttttacagatatgctggttcaccatattccatcagccaaagatgctgcc
agcaagaaggttgaacatatttacactgggcctgaagattcaatgatctacaaggctatg
gaaaaatgtgatcctgctggcccactaatggttaatgtcactaagttatatcccaagtct
gattgcagcgtgtttgatgcattcggtagagtctatagtggtgaaattcagacaggtcag
actttacgtgttcttggagaaggctattccccggatgacgaagaggatatgacagtgaaa
gaagtaacaaaactgtggatctatcaagctcgatatcggatacccattgccaaggcccct
ccaggtacatgggtgttaattgaaggagttgatgcttcaatcatgaaaactgccaccctt
tgtaatgttgactacgatgaggatgtctacatatttcggcctcttcagttcaatacactt
cctgttgttaaaacggctactgagcctctaaatcctagtgagcttccaaaaatggtggag
ggtctcaggaagataagcaagagctatcctctggccatcacaaaagttgaggagtccggt
gagcacaccattttaggtactggagaattgtatctggattcaattatgaaggatttgaga
gagctctactctgaagtggaagtcaaggtggctgaccctgttgtttcattctctgaaaca
gtggttgagtcttcatctatgagatgctttgctgagacacctaacaaaaagaataagata
acaatggttgcagagccgttggaaaaaggactagctgaagatattgaaaatggagttgtt
agtatcgactggaaaaagaaggaacttggcgaattctttcagaaaaaatatgactgggat
ctgcttgccgcgcggtcaatatgggcatttgggcctgataagcagggacccaatattttg
ttggatgacacattatccagtgaagtggataagagcttgctgaattctgtcaaagattct
attgttcaggggtttcaatggggtgctcgggaagggcctttgtgtgatgagcccatcaga
aatgtgaagttcaaaattgttgatgcacggatagcacctgaaccattacatcgcggatca
gggcagatcattccaactgctcggcgtgtggcttattcatcatttctcatggcaactcct
cgtctcatggagccagtatattatgtggagatacaaacaccaatagactgtgtctctgca
atctacacagtgttatctcgaaggcgtggacatgtgacagctgatgtcccccagccaggg
accccaagttacactgttaaggcatttttacctgtgatagaatcatttggtttcgagaca
gacttgagatatcatactcaaggacaagcattttgcctctcggcctttgaccattgggct
atagttcctggtgatcctcttgacaagagcatagtcttgcggcctctggagcctgcccca
attcagcaccttgcgcgagaattcatggtgaaaacaaggcgcagaaagggtatgagtgaa
gatgtcagtattaacaaattctttgacgaggcaatgatggtggaattagctcagcatgcg
gccgatcatcaatatcaaatgatgtaa
DBGET
integrated database retrieval system
