Rathayibacter sp. VKM Ac-2759: GSU68_09695
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Entry
GSU68_09695 CDS
T10520
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rath Rathayibacter sp. VKM Ac-2759
Pathway
rath03030
DNA replication
rath03410
Base excision repair
rath03420
Nucleotide excision repair
rath03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rath00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GSU68_09695 (ligA)
03410 Base excision repair
GSU68_09695 (ligA)
03420 Nucleotide excision repair
GSU68_09695 (ligA)
03430 Mismatch repair
GSU68_09695 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rath03032
]
GSU68_09695 (ligA)
03400 DNA repair and recombination proteins [BR:
rath03400
]
GSU68_09695 (ligA)
Enzymes [BR:
rath01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GSU68_09695 (ligA)
DNA replication proteins [BR:
rath03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GSU68_09695 (ligA)
DNA repair and recombination proteins [BR:
rath03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GSU68_09695 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GSU68_09695 (ligA)
MMR (mismatch excision repair)
DNA ligase
GSU68_09695 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GSU68_09695 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
BRCT
Motif
Other DBs
NCBI-ProteinID:
QHC66810
UniProt:
A0A6P1FC62
LinkDB
All DBs
Position
complement(2107716..2110193)
Genome browser
AA seq
825 aa
AA seq
DB search
MSGRVVDPAERVDELRARIRSASEDYYAADSSPLADAEYDALVRELGELEAAHPELATDD
SPTQTVGGIVGAGLAPIDHAERMLSLDNVFSAEELREWCEKTVASSARPIAWLTELKIDG
LAISLHYENGRLVTAATRGDGRTGEDVTVNALQVAGIPQQLAGEGHPALVEVRGEVFIPV
AAFEALNRLQETLRDEAVEEARARWAARPAATRGAFEEEKARTSALRRFPTFANPRNAAS
GGLRQQLDKKSGLDLRAGEARVGSLALYVHGIGAWPDPPVATQSEVYGLLSSWGLPVSAH
NSVSASVDEVVAFVERYGRERHSVEHEIDGVVVKVDELALHDELGATSRAPRWAIAYKYP
PEEVHTKLLDIVVSVGRTGRATPFAQMEKVKVAGSEVRQATLHNADVVKAKGVLIGDTVV
LRKAGDVIPEVLGPVVELRDGTEREFVMPTQCPECGTTLAPSKEGDVDLRCPNSESCPAQ
VRGRVEHIGSRGALDIEALGEVSAAALTQPLVPSDPPLRTEAGLFELTLADLFPIEVVVR
DSETGLQKLDASGEPKVVTPFKRKRQLAKDGAFDPENPEFAGDAASVPSTNAVRLIENID
RAKTKELWRLLVSLSIRHVGPVAARALAGYFGSLDAIRAASREELAAVDGVGGIIADALL
DWFAVDWHVEIVDRWAAAGVRFSTPGHPGPGAADAAGGVLAGLTVVATGSLEGYSREGAL
EAIMQAGGKAGSSVSKKTHYVAAGPGAGSKLGKAEQLGVRIIDAAQFHLLVTQGPEAIAL
PEEGAAETAEAAAGPDAVEGSGETATAETSTAETTTAQEATDGDA
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcagggtggtcgatccggccgagcgggtcgacgagctccgcgcgcggatccgc
tccgcgagcgaggactactacgcggccgactcgtcgccgctcgccgacgccgagtacgac
gcgctggtgcgcgagctcggcgagctcgaggcggcgcaccccgagctcgccaccgacgat
tcgcccacgcagacggtcggcggcatcgtcggcgccggtctggcgccgatcgaccacgcc
gagcggatgctctcactcgacaacgtcttctcggccgaggagctgcgcgagtggtgcgag
aagacggtcgcctcctccgcccgccccatcgcgtggctgaccgagctcaagatcgacggc
ctcgcgatctcgctgcactacgagaacggccgcctcgtcaccgcggcgacccgcggcgac
ggccgcaccggcgaggacgtcacggtcaacgccctgcaggtcgcgggcatcccgcagcag
ctcgccggcgagggccacccggcgctggtcgaggtgcggggagaggtcttcatccccgtc
gcggccttcgaggcgctcaaccgtctgcaggagacgctccgcgacgaggcggtcgaggag
gcgcgcgcccgctgggcggcccgccccgccgccacccgcggcgcgttcgaggaggagaag
gcgcgcacgagcgcgctgcggcgcttcccgaccttcgcgaacccccgcaacgccgcgagc
ggcggcctgcgccagcagctcgacaagaagtcgggcctcgacctgcgggccggcgaggcg
cgcgtcgggtcgctcgccctctacgtgcacggcatcggcgcctggccggatccgccggtc
gcgacgcagtccgaggtctacgggctgctctcgtcgtgggggctgccggtcagcgcgcac
aacagcgtgtcggcgtcggtggacgaggtcgtcgcgttcgtcgagcgctacgggcgcgaa
cggcactcggtcgagcacgagatcgacggagtcgtcgtcaaggtcgacgagctcgcgctg
cacgacgagctgggggcgaccagccgcgctccgcgctgggccatcgcctacaagtacccg
ccagaggaggtgcacacgaagctcctcgacatcgtcgtcagcgtcggccgcaccggccgg
gccacccccttcgcccagatggagaaggtcaaggtcgccggctccgaggtgcgtcaggcc
accctgcacaacgccgacgtcgtgaaggcgaagggcgtgctgatcggcgacacggtcgtg
ctgcgcaaggcgggcgacgtcatccccgaggtgctcggcccggtggtcgagctgcgcgac
ggcaccgagcgcgagttcgtcatgccgacgcagtgccccgagtgcggcacgacgctcgcg
ccctcgaaggagggcgacgtcgacctgcgctgccccaactcggagtcgtgccccgcgcag
gtgcgcggccgcgtcgagcacatcggcagcaggggcgccctcgacatcgaggcgctcggc
gaggtcagcgccgcggcgctcacgcagccgctggtcccctccgacccgcccctgcgcacc
gaggcgggcctgttcgagctcaccctcgccgatctgttcccgatcgaggtcgtcgtgcgc
gactccgagaccgggctgcagaagctcgacgcatcgggcgagccgaaggtggtgacgccg
ttcaagcgcaagcggcagctcgcgaaggacggcgcgttcgaccccgagaatcccgagttc
gccggcgacgccgcctccgtgccgtcgaccaacgcggtgcgcctcatcgagaacatcgac
cgggcgaagaccaaggagctgtggcgtctgctggtgtcgctgagcatccggcacgtcggc
ccggtcgcggcgcgagccctcgccgggtacttcggctcgctcgacgcgatccgcgccgcg
agccgcgaggagctggccgccgtcgacggtgtcggcggcatcatcgccgacgcgctgctc
gactggttcgccgtcgactggcacgtcgagatcgtcgaccgctgggccgccgccggcgtg
cgcttctcgaccccggggcatcccggcccgggagccgcggacgccgcgggcggtgtcctc
gccggactcaccgtcgtcgcgacaggctcgctcgagggctactcccgcgagggcgccctg
gaggcgatcatgcaggcgggcggcaaggccggctccagcgtctcgaagaagacgcactac
gtcgcggccggcccgggcgccggcagcaagctcggcaaggccgagcagctcggcgtgcgg
atcatcgacgccgcccagttccacctcctggtgacgcaggggcccgaggcgatcgcgctc
cccgaggagggtgccgccgagacggcggaggccgcggccggaccggacgccgtcgagggc
tcgggagagaccgcgaccgccgagacctcgaccgccgagaccacgacagcccaggaggcg
accgacggcgatgcctga
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