Rickettsia australis: MC5_02260
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Entry
MC5_02260 CDS
T01783
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rau
Rickettsia australis
Pathway
rau03030
DNA replication
rau03410
Base excision repair
rau03420
Nucleotide excision repair
rau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MC5_02260 (ligA)
03410 Base excision repair
MC5_02260 (ligA)
03420 Nucleotide excision repair
MC5_02260 (ligA)
03430 Mismatch repair
MC5_02260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rau03032
]
MC5_02260 (ligA)
03400 DNA repair and recombination proteins [BR:
rau03400
]
MC5_02260 (ligA)
Enzymes [BR:
rau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MC5_02260 (ligA)
DNA replication proteins [BR:
rau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MC5_02260 (ligA)
DNA repair and recombination proteins [BR:
rau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MC5_02260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MC5_02260 (ligA)
MMR (mismatch excision repair)
DNA ligase
MC5_02260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MC5_02260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Cys_rich_KTR
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AFC70834
UniProt:
H8K6E1
LinkDB
All DBs
Position
413092..415161
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIDFISEEEAKKLLKELSCKIAVYNHAYYIEDNPLVSDAEYDQLVNINLKLEQKFPHL
VLENSPSKEVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPIFC
EPKIDGLSFSAIYKNGLLITGATRGDGYVGEDITANIKTIKNFPHKIDNVPAFLEVRGEI
YIEKQDFLNLNEEQEEQGRDQFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTEQNL
AASQDQLLTKLKEFGFSVNEISKLTNSEEEVFAFYEYLKTNRENLPYEIDGVVYKLNDFA
LQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIAIGGVTVSR
ATLHNFQEITRKDVQIKDYVFLQRAGDVIPKITGVDIEKRPNDTIAFEFPLFCPSCNSKL
YYVPEDIIIRCDNGLNCPAQNYKRICHFVSKNAMDIEGLGLKQVEFLIDQGLISNPLDIF
FLKEKNEASLTKLENMDGWGQKSVEKLFKNIEKSKNISLPRFIYALGIRHIGEQNAKLLA
REFGSYNNFIAQMELLSKNDSYIYQKLNNLEGIGDKILIDIIGFLDVKENIQLIKKFGEI
LNIEDYKETREQSSLTGKIVVFTGSLPTISRAEVKATAEKFGAKVAASVSSNTDLVVAGL
DAGSKLKKAKELNIKIIDEEEWLTLIKNA
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgattttatatctgaagaagaagcaaaaaaattactaaaagaactcagc
tgtaaaatagcagtgtataaccatgcttattatatagaggataatcctttagtttcagat
gccgagtatgatcagctagttaatatcaatctaaaattagagcagaaatttcctcattta
gttttagaaaatagtcctagcaaggaagtaggggctaaaatagcaaataaatttgctaaa
gttacgcatcaagttcctatgctatctcttagtaatgcttttgatgagcaagatgtaaga
gattttgtagaccgtataaaaaatttcttacgtcttgatgagtttgctcctatcttttgt
gaacctaaaatagatggcttatctttttctgctatatataaaaacgggctgcttataaca
ggcgcgaccagaggtgatggatatgtcggtgaagatataacggcaaatattaaaacaatc
aaaaattttcctcataaaatagataatgttccggcatttttagaagtacgaggggaaatt
tatattgaaaaacaagattttttaaacctaaatgaagaacaagaagagcagggcagagat
caatttgctaacccccgtaatgctgctgctggttcgcttcgtcagcttgatgcttctatt
acggctaaacgaccgctcaaatattttgtctattcaggtggagtaactgagcagaatctg
gctgcttctcaagatcaattacttacaaaattaaaagaatttggttttagcgttaatgaa
atatctaagcttacaaattccgaagaagaagtttttgccttttacgaatatttaaaaaca
aatcgagaaaatttaccttatgaaattgatggggtagtatataagctaaatgattttgca
ctacaaaatagaatgggttttattgctcgatctccacgttttgctaccgctcataaattt
cccgcaataataggacaaacaaaactgctctctattactgtgcaggtcggtagaactggt
acgttaacgccggtagcagagcttgagcctatagcaataggcggggtaaccgttagcaga
gcaacgctgcataatttccaagaaatcacacgcaaagatgtgcagattaaggattacgta
ttcttgcagcgtgccggtgacgttattcctaaaatcactggagttgatatagagaagcgt
cctaatgatacaatagcatttgaatttcctttattttgtccttcatgtaattctaagttg
tattacgttcctgaagatattattatacgctgtgataacggtcttaattgtcccgctcag
aattataagcgtatatgccattttgtatcaaaaaatgcgatggatattgaagggcttggg
cttaagcaagttgagtttttaatagatcaggggttgattagtaatcctctcgatattttc
tttttaaaagaaaaaaatgaagctagtttaacaaaacttgaaaatatggatggatggggt
caaaaatcagtagaaaagctttttaaaaatatagaaaaatcaaaaaatattagcttgcca
agatttatatatgcactaggcataaggcatattggtgaacaaaatgctaaattacttgct
agagaatttggcagctataataattttatagctcaaatggaattgcttagcaaaaacgat
tcgtatatctatcaaaaactaaacaatttagaaggaatcggtgataagattttaatagat
attattggctttttggacgttaaagaaaatatccagcttatcaaaaaatttggtgaaata
ttaaatattgaagattataaagagactagggaacaaagcagtttaacaggtaagatagtg
gtatttaccggtagcttaccgacgatatctagagcggaagttaaagcaacagctgagaag
tttggagctaaagttgcagctagcgtatcatcgaacacggatttagtcgtagcaggcctt
gatgcaggcagtaagcttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttacgcttataaaaaacgcttag
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