Rhizobium anhuiense bv. trifolii: NE851_25915
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Entry
NE851_25915 CDS
T08535
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
raw
Rhizobium anhuiense bv. trifolii
Pathway
raw03030
DNA replication
raw03410
Base excision repair
raw03420
Nucleotide excision repair
raw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
raw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NE851_25915 (ligA)
03410 Base excision repair
NE851_25915 (ligA)
03420 Nucleotide excision repair
NE851_25915 (ligA)
03430 Mismatch repair
NE851_25915 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
raw03032
]
NE851_25915 (ligA)
03400 DNA repair and recombination proteins [BR:
raw03400
]
NE851_25915 (ligA)
Enzymes [BR:
raw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NE851_25915 (ligA)
DNA replication proteins [BR:
raw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NE851_25915 (ligA)
DNA repair and recombination proteins [BR:
raw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NE851_25915 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NE851_25915 (ligA)
MMR (mismatch excision repair)
DNA ligase
NE851_25915 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NE851_25915 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_ligase
Nlig-Ia
FdhE_central
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UTS90012
LinkDB
All DBs
Position
complement(3480205..3482361)
Genome browser
AA seq
718 aa
AA seq
DB search
MPTEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEAR
FPELIREDSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSEMPADTQFAMVQTFRDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVV
YKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRA
VDARPYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYAAFETGMREAETLAGDAWNDLNAIE
GIGEVVARAIVEFYKEPRNVEVITRLIEEVTPEEAEQPVTAGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccgaaggttccgccgtcgacacgttgacgatcgaagaggctgccgccgagctc
gaacggctggcaaaggagatcgcgcatcacgatgcgctctatcacggcaaggaccagccg
gagatttcggatgccgattacgacgcgctgaagcgccgcaatgatgcgctggaagcgcgc
tttcccgagttgatccgcgaagacagcccatcgcggcatgtcggtgcagcgccctccgtg
acgttctcgcctgtcgtccatgcgcggccgatgctgtcgctcgacaacaccttctcgcag
gaggacgtgcaggatttcgtcgccggcgtctatcgcttcctcggccgtctgccggaccag
tcgatcgcctttaccgccgagccgaagatcgacggtctctcgatgtcgatccgttacgag
aacggcaggctggtgacggctgcgacgcgcggagacgggacgacgggggagaacgtcacc
gccaacatccggaccatcgccgagatccccaacgagctgccgaagggcgtgcccgctgtc
gtcgagatccgcggcgaggtctatatggccaagagcgacttcctggcgctgaatcggcag
atggaggcggagggcaaacagacctacgtcaatccgcgcaacaccgcggccgggtcgctg
cgccagctcgacgccaaggtgacagcgagccgcaagctgaaattcttcgcctatgcctgg
ggcgagatgtctgagatgcccgccgacacgcaatttgccatggtgcagacctttagagac
tggggtttcccggtcaatccgctgatgaagcggctgaattcggtcgccgacatcctggcg
cattatgacgagatcggccttgagcgtccggatctcgactacgacatcgacggcgtcgtt
tataaggtcgacagtctcgaactgcaggcccgtctcggcttccgctcgcgttcgccgcgt
tgggcgacggcgcataagtttccggccgaacaggccttcaccgaggtcgagaagatcgag
atccaggtcggccgcaccggggcccttacgccggtggcgcggctgaagccgatcacggtc
ggcggcgtcgtcgtcaccaatgcgacgctgcacaacgaggattacatcaagggcatcggc
aatagcggcgagcgcatccggccggaggaacacgatatccgcgaaggcgataccgtcatc
gtccagcgcgccggcgacgtcattccgcagatcctcgatgtggtgatggaaaaacgcgcg
gtcgacgcccggccatacgaattcccgaagacatgcccggtctgcggttcgcatgcggtg
cgcgaggtcaacgagaagaccggcaagatggattcggtgcgccgctgcacgggtggcttc
atttgccgagcgcaggcgacggagcatttgaagcacttcgtttcgcgcaacgctttcgat
attgaagggctcggttcgaagcagatcgacttcttcttcgaaaacgaggacgcgtcgctg
cagatccgtaccgcgcccgacatcttcacgctggagaagcgccagcagcaatcgctgacc
aagctcgaaaatatcgacggcttcggcaaggtcagtgtcggcaagctctatgcggcgatc
aacgaacggcgcagcattgcgctccaccgcttcatctacgcgctcggcatccgtcatgtc
ggcgagaccacggcgaagctgctggcgcgctcctatggcacctatgcggcctttgagacg
gggatgcgggaggccgagacgcttgccggtgacgcctggaacgatctcaatgccatcgag
ggcatcggcgaggtcgtggcgcgggctatcgtcgaattctacaaggagccgcgcaatgtc
gaggtgatcacccggcttatcgaggaggtgacgcccgaggaggccgaacagccggtgacg
gcgggcagcccggtcgccggcaagaccgtcgtcttcaccgggtcgctggaaaaattcacc
cgcgacgaggcgaaggcgagggcggaaagcctcggcgccaaggtggcgggatcggtctcc
aagaagaccgacatcgtcgttgccggccccggcgccggctccaagctcgacaaggcgcgc
gagctcggcgtgcagacgatggacgaggatgaatggctggcgttgatcagcgggtga
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