Radiobacillus kanasensis: KO561_02875
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Entry
KO561_02875 CDS
T08696
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rax
Radiobacillus kanasensis
Pathway
rax03030
DNA replication
rax03410
Base excision repair
rax03420
Nucleotide excision repair
rax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KO561_02875 (ligA)
03410 Base excision repair
KO561_02875 (ligA)
03420 Nucleotide excision repair
KO561_02875 (ligA)
03430 Mismatch repair
KO561_02875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rax03032
]
KO561_02875 (ligA)
03400 DNA repair and recombination proteins [BR:
rax03400
]
KO561_02875 (ligA)
Enzymes [BR:
rax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KO561_02875 (ligA)
DNA replication proteins [BR:
rax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KO561_02875 (ligA)
DNA repair and recombination proteins [BR:
rax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KO561_02875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KO561_02875 (ligA)
MMR (mismatch excision repair)
DNA ligase
KO561_02875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KO561_02875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
Nlig-Ia
HHH
RNA_ligase
HHH_8
BRCT_2
5_3_exonuc
Zn_ribbon_NUD
DUF3837
AF0941-like
Motif
Other DBs
NCBI-ProteinID:
UFT99924
LinkDB
All DBs
Position
545702..547705
Genome browser
AA seq
667 aa
AA seq
DB search
MNVELAKEKLAALRDELNQYNYEYHVLDRPSVSDYEYDVKMRELKDIEAQFPELITADSP
SQRVGGEPLESFQKVNHAIPMLSLGNAFNEQDLRDFDRRVRDGIGEEPTYVCELKIDGLA
VSLLYENGQFVRGATRGDGTTGEEITNNLKTIRSIPLKLSNEETMEVRGEAFMPHKSFVK
LNEVKEENGEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYSVGLWEEGQLESHSERLE
YLKEIGFKTNPEWRKCTNIDEVIQFVEGWMEKRPQLSYEIDGIVIKVDRLDHQEQLGFTA
KSPRWAIAYKFPAEEVVTKLKEIELSVGRTGVITPTAILEPVKVAGTTVQRASLHNEDLI
REKDIRINDTVVIKKAGDIIPEVVRVITDQRTGQEDPFYMPTECPACGSELIRLEEEVAL
RCINPNCPAQLKEGLIHFVSRNAMNIDGLGEKVVEQLFEEKLIHTIADLYKLQRDDLLKL
ERMGEKSVDNLLNAIESSKQNSLERLLFGLGIRYVGSKAAKTLAEYFEQMEQLMKATAAD
LVAINEIGDKMAESIERYFSEEKVQNLIKELYTLGLNMEYKGPKRSEQAADSVFSGKTIV
LTGKLETFGRTEAKERIEALGGKITGSVSKKTDLLIAGEDAGSKYDKAKDLGIEIWDEQQ
LIQALEG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtggaactagccaaagaaaaattagctgctctaagagatgagcttaaccaatac
aattatgaatatcacgttttagatcgtccttccgtttcagattatgagtatgacgtgaag
atgcgtgagctcaaggatatagaagcacagtttcctgagctgattacagcagattctccc
tcacaacgagtagggggagaaccgctggaatcattccaaaaggtgaaccatgcgattccg
atgcttagtttaggcaatgcctttaacgagcaagacttacgtgactttgaccgacgtgta
cgagatggaatcggggaagaaccaacctacgtatgtgaactaaaaattgatggattagcc
gtttctctattatatgaaaatggccagtttgttcggggagccacacgtggggatggtaca
acgggcgaggagattacgaataacttgaaaacgattcgtagtattccgttaaagctatcg
aacgaagaaacgatggaagtacgaggagaagcatttatgcctcataagtcgttcgtgaaa
ttaaatgaagtaaaggaagagaacggggaagaaccatttgccaatcctcggaatgcagca
gcaggatcattaagacagctcgatcctaaaattgccgcaaaacgaaatctagacatcttt
ttatacagtgttggtttatgggaagagggtcaattagaatctcatagtgagcgattggaa
tacttgaaagaaataggctttaaaacgaatccagagtggagaaagtgtacgaatatagac
gaggtcattcagtttgtggaaggttggatggaaaagaggccacagcttagctatgaaatt
gatggaattgtcatcaaggtggatcgtctggaccaccaagagcaattagggttcacggca
aaaagtccgcgttgggccatcgcttataagtttccagcagaagaagtggtgacaaagctg
aaggagattgaactaagtgtcggtcgcacaggagttattacaccaacggcaattctagaa
ccagtgaaggttgctggaacaaccgtgcaacgtgcatctctacataatgaagacttaatc
cgtgaaaaagacatccgtataaacgatacagtcgtcattaaaaaagcgggcgatattata
ccagaagttgttcgagtaattacggatcaacggactggacaagaggaccctttttacatg
ccaacagaatgtcccgcttgtggaagtgagctcattcgtctagaggaagaagtggcactc
cgttgtattaatccaaattgtccagcacaactaaaagaagggttaatccactttgtttcc
cggaatgccatgaatattgatggattgggagaaaaagtggtggaacaactttttgaagaa
aagctaatccatacgattgccgatctttataagctgcaacgagacgatttgttgaagcta
gaacgaatgggagagaaatccgtcgacaaccttcttaacgcgattgaatcgtccaagcaa
aattcgttggaaagattattgttcggattaggtattcgttacgtaggctcaaaagctgca
aagacgttagccgagtattttgaacagatggaacagctaatgaaggctacagctgctgat
ttagtagccattaatgaaatcggcgataaaatggcggagtccattgaacgttatttttca
gaagaaaaagtacaaaatctaatcaaggagctctatacactaggtctaaacatggaatat
aaagggcctaaacgttccgaacaagcggcagattccgtattctctggaaaaacgattgtt
ttaacaggaaagctagaaacattcggtcgtacggaagcgaaggaacgaattgaggcacta
ggtggaaaaataaccggaagtgttagtaagaaaacagatcttcttatcgctggtgaagat
gcggggtcgaagtatgataaagcgaaggatttaggaattgagatttgggacgaacaacag
cttatccaagcattagaaggttag
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integrated database retrieval system
