Rousettus aegyptiacus (Egyptian rousette): 107516781
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Entry
107516781 CDS
T06036
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ray
Rousettus aegyptiacus (Egyptian rousette)
Brite
KEGG Orthology (KO) [BR:
ray00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ray03036
]
107516781 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
ray03400
]
107516781 (SMCHD1)
Chromosome and associated proteins [BR:
ray03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
107516781 (SMCHD1)
DNA repair and recombination proteins [BR:
ray03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
107516781 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_6th
Ig_SMCHD1_4th
Ig_SMCHD1_7th
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
Motif
Other DBs
NCBI-GeneID:
107516781
NCBI-ProteinID:
XP_016012370
LinkDB
All DBs
Position
Unknown
AA seq
2001 aa
AA seq
DB search
MAAAGSGGPLVGTGQGGGGDGCRTVYLYDRREKESELGDRVVQVEERSDYAGFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLHSVDQLLLTATKERIEFLPHYDT
LVKSGMYEYYASEGQNPLPFAFAELIDNSLSATSRNTGIRKIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKESIYSGYIRNRKPSDSVHITNDDE
RFLHYLISEEKEKNSFTAVIITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEKH
TSKEGGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTATDSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKGARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDRFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRSDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLYYGSIEKFFLYGDHDGEVYATGGEVQIAMEPRALYDETRT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGPSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVVNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PLEFQDEFGHASQLINDIQPVLEASGLSLQYEEITKGPNCVIRGVTAKGLVNSCQGKNFN
LKVILPGLKEDSQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQ
PKLIIHCKFSGAPNLPVYSVDCSSSGTSILSGSAIQVQNIKKDQTLKAKIEIPSCKDVAS
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHL
TSTLAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSSDSLSALAIAGIGLDK
SQLKTTFQENTQSISVKGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
DLKVSIPVINGRELQNPLIVQLCDQWDNPAPIPQVKISLIKGNNLKLTPSNQQHKTDERG
RANLGVFSVNAPRGEYTMQIKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGVFTDFLITVISEDDSIIKNINPARIFMKMWKLSNNGNRPPANAEIFSCNKIKDNDKED
GCFYFREKAVPNKVGIYCIQFGLMDKTNTLNSEQILVDVLPNQPVKLVPEIQPDTPAVSN
VHSVTNRTLVKNLHLIITDEYNNQTGIDLVGTVIATIKGSNEEDTDTPLFIGKVKTLEFP
FVNGSAEITSLVLAENSPGKDSTEYHIVFEPQLPALSRTLKSYILPFMFSDDVKKQQQMQ
AFTKKKDELSKYIGMYRSVFETSKQLIDEMKCQVEGAKLKEAQLRNELKTHNIDIPITQQ
MPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGNVLGKIAHLAQIEDDRAAMVISWH
LASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPI
GDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKIAHCPTLLTRDG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLVLGEQIDLLQQYRNALDKLNNLTE
DLNSQLEYLQSPEMKKKKQELDEREKNLKLIEQKLGMTSTHKCNDSLRHPAKVEITDCPI
PLKRMRREATRQNRSITKTDV
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcagcggcgggcccttggtggggactggacagggcggcggaggcgac
ggctgcaggacggtgtacttgtatgaccggcgtgagaaggagtcggagctcggtgaccgg
gtggtgcaggtcgaggagcgctcggactacgcggggttccgtgcctctgtgtgccagaca
cttggcatttcacctgaagagaagtttgttattacaacaacaagtagaaaagaaattacc
tgtgacaattttgatgaaactgttaaagatggagttactctatacctgctacattcagtc
gatcagttattactaacagctacaaaagaacgaattgaattcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgccattt
gcttttgccgaattaattgacaattcattgtctgctacttctcgtaacactgggattaga
aaaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaattgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgaccagtgcca
gtgccacgcagtttaaacagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttttttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gagcttgtgctttctaaagaagattttgagaagaaggagaaaaataaagagtcaatatat
agtggatatattagaaacagaaagccttctgattctgttcatattacaaatgatgatgaa
cgatttctacattatcttatctcagaagagaaagaaaaaaatagctttactgctgtgatt
attacaggagtacaaccagaacacatacagtacttgaaaaattatttccatctttggaca
agacagttagcgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacat
acatcaaaagaaggtggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatacaagatgacatgcagacgttgtat
ataaacacagcaactgatagttttgagttcaaagctcatgttgaaggagacggtgtagtg
gaagggattatccgatatcaccctttcttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaaattaaaggatgaagatgatgacgatgattgtttcatacttgagaaa
ggagcaagagggaaaagacctatttttgaatgtttttggaatggccgactaataccatat
acatctgttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccaatt
gaatgctacaatagaatatctggtgcattatttactaatgacagattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctttatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaaggaataatt
acacgttctgatcttccttctaaaaagcagggcccctgggccacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacacttcctctc
tattatggaagcatagaaaagttttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaagttcaaattgcaatggaacctcgagcactatatgatgaaacaagaact
gtgccaattgcaaagctggataggacagttgctgagaaagctgtaaaaaaatatgtagaa
gatgaaatggcaaggcttcctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattaggcctgccggaacccccattggtgcattaagaattgaaatactg
aataaaaaaggagaagcaatgcaaaaacttccaggaccaagtcatggaggatcaaagaaa
ctcctcgttgagctcaaagttatattacactcttcaagtggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattacacattgaaattacaagttgtagtgaatgaaagtaatgcagacact
tatgctggaagaccactaccatctaaagcaattaagttttctgttaaagagggtaagccg
gagaaattttcatttggtcttcttgatcctccttttcgtgttggagttccattcaatatc
cctctggagtttcaggatgaatttggtcatgctagtcaactaataaatgatattcaacca
gttcttgaagcaagcggtttatctttacaatatgaagaaataaccaagggaccaaattgt
gtaattcgaggtgttacagctaagggccttgtaaactcttgtcaaggcaagaattttaat
ctgaaggttattctgccgggtttaaaagaagactcacaaattttgaaaattagattacta
ccaggtccccctcgtcgattgaaagtgaaacctgattctgaaattctggtaatagaaaat
ggaacagccttcccatttcaagtggaagttttggatgaatcagacaatattacagcacag
ccaaaattgattattcattgtaagttttcaggtgcacctaaccttccagtctacagtgtg
gattgcagtagttctggaaccagtattttatcaggatctgcaattcaagttcagaatatt
aaaaaagaccagacacttaaagctaaaattgaaatacctagttgtaaagatgtggcatct
gtggagaagacaattaagttgcttcccagtagccatgttgcaagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaagatgaagttaattggatagcaggc
gatatcatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatccattta
acatcaactttagcagagaaaattaaagttaattggactcctgagattaacaaagaacac
ctgctacagggtctgcttcctgatgtacaagtaccaacatctgtaaaagatatgcgctat
tgccaggtttcatttcaagatgatcatgtatctttggaaagtgcatttacagtaagaccc
cttcccgatgaacctaaacatctaaaatgtgagttaaaaggtgggaaaacagtacagatg
ggccaagagcttcaaggagaaatagttataatagttacagatcaatatggaaatcagatt
caagcattttcatcagattctttatctgccttggcaattgctggaattggacttgataag
tcacagttgaaaactacttttcaggaaaatacacagagtataagtgtaaaaggcatcaaa
tttattccaggtcctcctggaaataaggatctttgttttacttggcgtgagttttctgac
tttattcgcgtgcagctaatttctggaccaccagctaaactacttcttatagactggcca
gatttaaaggtgtccattccagtaattaatggaagagaattacagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacctataccacaggttaaaataagtctaata
aaaggtaacaatttaaagctcactccttcaaatcaacagcataaaacagatgaaaggggc
agggcaaatttgggagtgttcagtgttaatgcccctagaggagaatatacgatgcagatt
aaagccatctataacaagaataccatagaaggacctataattaagttaatgattcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggtgttttcactgattttttgattactgttatttctgaagatgatagtatcattaaa
aatattaatcctgcacgtattttcatgaaaatgtggaagctctctaacaatgggaaccga
ccaccagcaaatgcagaaatatttagttgtaataaaataaaagataatgacaaggaagat
ggctgcttctacttcagggaaaaagccgttcctaataaagtggggatatattgtatccag
tttggtttaatggataaaacaaatactcttaacagtgaacagattttagttgatgttctg
cctaatcaacctgtgaagttagtacctgaaattcagccagatacaccagctgtttcaaat
gttcactcagttaccaataggaccttggtcaaaaatctacatcttattatcacggatgag
tacaacaatcagactggaattgatttggttggtactgtaatagctaccattaaaggttct
aatgaggaagatactgatacaccactctttattgggaaagtcaaaacacttgaatttccc
tttgtgaatggttcagccgaaatcacgagtctagtactggcagaaaatagtcctggaaag
gatagtactgaatatcatattgtatttgagcctcagctgccagctttgtcaagaacatta
aaatcatacatccttccatttatgttttctgatgatgttaagaagcaacaacaaatgcaa
gcatttaccaaaaagaaggatgaattatctaaatatattggaatgtatagaagtgtattt
gaaaccagcaaacaacttattgatgaaatgaagtgccaggtcgaaggagcaaaattaaaa
gaggcccagttgcgaaatgaactaaaaacacataatattgacattcctataacacaacag
atgccacacattgaagcacttttgaaaagaaagttgtcagaacaggaagaactaaagaaa
aaacctagaagatcatgtactcttccaaactatactaaaggcagtggaaatgttttggga
aagattgcacacctggcacaaattgaagatgacagagctgcaatggttatttcctggcat
ctggcaagtgatatggattgtgttgtcaccctgaccactgatgctgcacgtcgtatctat
gatgaaactcaaggtcgtcagcaggtgttgccccttgattccatttataagaagactctt
ccagactggaaaagacctctacctcattaccgaaatggaaaattatacttcaaacccatt
ggtgatccagtctttgcccgagatttgttaacatttccagataacatagaacattgtgaa
acagtatttggtatgctgttaggagacaccattattttggacaatttggatgctgccaat
cattatagaaaagaggttgttaaaattgcccattgtcctacactgctcaccagagatgga
gatcgaattcgaagcaatggaaagttcgggggccttcagaataaagctcctccaatggac
aaacttcggggaatggtatttggagctccagtaccaaaacagtgcctggtcttaggggaa
caaatagatcttcttcaacagtatcgtaatgctctggacaagttgaacaatctgactgag
gaccttaacagtcaattagagtaccttcagtctcctgaaatgaagaagaaaaaacaggaa
cttgatgaacgagaaaaaaatctgaaattaatagagcaaaaactaggtatgacttccaca
cataagtgtaatgattcattgcgtcatccagcaaaggttgaaataacagattgtccaatt
cctcttaaaagaatgagaagagaagctaccagacaaaataggtctataaccaaaacagat
gtgtga
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integrated database retrieval system
