Rossellomorea aquimaris: U9J35_01825
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Entry
U9J35_01825 CDS
T09670
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
raz
Rossellomorea aquimaris
Pathway
raz03030
DNA replication
raz03410
Base excision repair
raz03420
Nucleotide excision repair
raz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
raz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U9J35_01825 (ligA)
03410 Base excision repair
U9J35_01825 (ligA)
03420 Nucleotide excision repair
U9J35_01825 (ligA)
03430 Mismatch repair
U9J35_01825 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
raz03032
]
U9J35_01825 (ligA)
03400 DNA repair and recombination proteins [BR:
raz03400
]
U9J35_01825 (ligA)
Enzymes [BR:
raz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U9J35_01825 (ligA)
DNA replication proteins [BR:
raz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U9J35_01825 (ligA)
DNA repair and recombination proteins [BR:
raz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U9J35_01825 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U9J35_01825 (ligA)
MMR (mismatch excision repair)
DNA ligase
U9J35_01825 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U9J35_01825 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
5_3_exonuc
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WRP06932
LinkDB
All DBs
Position
330050..332056
Genome browser
AA seq
668 aa
AA seq
DB search
MDRQSAENRINELHELLNQYNYEYHVLDKPSVTDSEYDQLLRELIELEDQFPDLKTADSP
SQRVGGAILDAFEKVEHRTPMLSLGNAFNEEDLRDFDRRVRQAVGDDFSYVCELKIDGLA
VSLRYEDGVFAQGATRGDGSIGEDITSNLKTIRSIPLKISEKISFEVRGEAFMPKGSFEA
LNKIKDEKGEEPFANPRNAAAGSLRQLDPKIAASRNLDLFLYALADIGDTGIDSHSEGLD
KLESLGFKTNPERKQCATIEEVIDYVGKWTDQRPNLSYDIDGIVIKVNSLEQQEQLGTTA
KSPRWAIAFKFPAEEVVTVLKEIELSVGRTGVVTPTAILAPVRVAGTTVQRASLHNEDLI
REKDIKIGDHVVIKKAGDIIPEVVNVLEDKRTGDEQEFHMPTHCPECESELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFREKLIEDVGDLYRLERDQLLQL
ERMGEKSADNLLDAIQASKANSLEKLLFGLGIRHVGAKAAKTLAQEFGSMDKLMNLGKEE
LTNVNEIGDKMADAIVAYFENDEVKELIQELKDAGVNLEYKGPKPVAASEVDSYFAGKTI
VLTGKIERLSRNEAKEKIELLGGKVTGSVSKKTDLVIAGEEAGSKLTKANELNIEVWDED
KLMEELNR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcgacaatcagccgaaaaccgtataaacgaactacatgaattgttaaatcagtat
aactatgaatatcatgttcttgataagccatctgttacagattcagagtatgatcagtta
ctgagagaactcatcgaactggaagatcaatttcctgatttgaaaacagccgattcacct
tctcagcgtgttggtggagcgatattggatgcctttgaaaaagtggaacatcggacgcca
atgctaagcttggggaatgccttcaatgaagaggatctccgggactttgatcgtcgtgtc
cgtcaagccgttggagatgacttttcctatgtatgtgagctgaaaattgatgggttggct
gtttctcttcgttatgaagatggtgtctttgcgcaaggggcgacaaggggggacggatcg
ataggagaagatattacctcaaaccttaagaccatccgttccattcctttgaagatttct
gaaaagatttcctttgaagttcgtggagaagcctttatgcctaaaggttccttcgaagcg
ttaaataaaatcaaagatgaaaaaggggaagagccttttgcgaacccccgcaatgcagct
gcaggttcactccgtcagctcgaccctaaaattgcagcatccagaaatctcgatcttttc
ttatatgcattagcggatattggagatacaggaattgactctcacagtgaagggttagat
aaattagaaagtctcggatttaaaacgaatcctgaacggaagcaatgtgcgacaattgaa
gaagtcattgattatgtcggtaaatggaccgatcaacgtccgaatctgtcgtatgacatt
gacgggatcgtgattaaagtcaattcactggagcagcaggaacagcttggaacaacagcg
aaaagtccacgctgggcgattgcattcaagttccctgctgaagaagtggtaaccgtttta
aaagaaattgaactgagtgttggccgtaccggcgtggtgacaccgacggcgatacttgcg
cctgtacgtgtcgctggtacaacggttcaacgcgcgtcccttcataatgaagatcttatt
agagaaaaagatattaaaatcggcgatcatgtcgtcattaaaaaagccggtgatatcatc
cctgaagtggtcaacgtattagaagacaagaggacgggtgacgaacaggaatttcatatg
cctacccattgtcctgaatgcgaaagtgagctggtcagacttgaaggggaagtcgccctt
cgctgtatcaaccctaaatgtccagcacagatccgggaaggtctgattcactttgtgtcc
cgtaatgccatgaacatcgatggtctgggggaaaaggtgatcagtcagttgttcagggag
aaattgattgaagatgtgggagacttataccgtttagaacgtgaccagctacttcaactg
gagcgcatgggtgaaaaatccgcggataaccttttggatgccattcaagcctcaaaagcc
aattccctggaaaagttgctttttggacttggaatccgtcatgttggagcaaaagcggcg
aaaacattggctcaagagttcggatcaatggacaagctaatgaacttgggcaaagaagag
ctgaccaatgtaaacgaaatcggcgacaaaatggctgatgccattgtggcctattttgaa
aatgatgaagtaaaagagctgatccaggaactgaaggatgcaggtgtaaatcttgaatac
aaagggccgaagccggtagccgcaagtgaagtcgactcttattttgcagggaaaaccatt
gtactaaccggaaaaattgagcgattaagtagaaatgaagcaaaagaaaagatcgaattg
ctcggtggaaaagtcactggcagtgtgagtaagaaaaccgatctagtcatcgcaggggaa
gaagcaggatcaaaacttacgaaagcgaatgagttgaacatcgaagtatgggatgaggac
aagctgatggaagaacttaaccgataa
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