Rhodopirellula baltica: RB10711
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Entry
RB10711 CDS
T00134
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rba
Rhodopirellula baltica
Pathway
rba03030
DNA replication
rba03410
Base excision repair
rba03420
Nucleotide excision repair
rba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RB10711 (ligA)
03410 Base excision repair
RB10711 (ligA)
03420 Nucleotide excision repair
RB10711 (ligA)
03430 Mismatch repair
RB10711 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rba03032
]
RB10711 (ligA)
03400 DNA repair and recombination proteins [BR:
rba03400
]
RB10711 (ligA)
Enzymes [BR:
rba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RB10711 (ligA)
DNA replication proteins [BR:
rba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RB10711 (ligA)
DNA repair and recombination proteins [BR:
rba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RB10711 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RB10711 (ligA)
MMR (mismatch excision repair)
DNA ligase
RB10711 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RB10711 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CAD76950
UniProt:
Q7UKD1
LinkDB
All DBs
Position
complement(5822909..5825029)
Genome browser
AA seq
706 aa
AA seq
DB search
MPQDRFVASDSIASRVQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENDHPDL
RRPDSPTQLVGGDVVDQLVQVPHRVPMLSIDNTYSREELAAAMERIEKSLEGESVAWTME
YKIDGVAGSIRYENGELTLALTRGNGQVGDDITHNVRTIRELPRSIADAALAHPEVAGGN
VPEVLEVRGELYMTDADLADLNVRQTDAGHEPFKNTRNVTAGTIRLLDPKIAASRNIRFF
CHGSGELVGVRASDHMTFLQHVQALGIPIAPDVVRFENKEDALQAIAKLELEMPDLPFEI
DGIVFKVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVAYLT
PVDIADTTVSRASLHNADEIERLDVRVGDTVVVEKAGKIIPKVVRVEKHARTKPLPKFEF
PTHCPQCDEVLTRDEGGVYIRCTNPACPAQLRQRLVYFGSRTGMDIDGLGEEVVDLLLQK
ELVENYADLYRLNVDELAELTWPRLRKGKGDEMIEVQFGRKNAESLVAGINESRTRGLAR
VLSSISIRHIGPRVAKLITAKFWNLDLLRSAKAEDLAAIHEIGDRIAESLVKFIHSESGS
QTLSDLDAVGVTMSETEPVATPDEEANLPLAGKNIVATGTLQHYTRDEIKARIEELGGRA
ASSVSKKTDFLIAGEKAGSKLTKAESLGVEVLSEDDFRLRYETEAT
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccccaggatcgtttcgtggcctccgattccattgccagccgcgtgcaacaactcgtc
gacgaaattaatcgccacaatcgcctgtactacgacgatgcggcacccgagatcaccgac
ctgcaatacgatcaattgctggccgagcttacgcaactcgaaaacgatcacccggacctc
cgccggcccgattcgccaacacaattggtcggcggcgatgttgtggaccaattggttcag
gttccgcaccgcgttcccatgttgtcgatcgacaacacctacagtcgcgaagaattggcc
gcggcgatggagcgaattgagaaatcgctcgaaggcgaatcggttgcgtggacaatggag
tacaagatcgacggtgtcgccggttccattcgctacgagaacggtgaattgacactggca
ctcacacgaggcaacgggcaagtcggcgatgacatcacacacaacgttcgcaccatccgc
gaattgccccgatcgatcgccgatgccgcacttgcacatccggaagttgccggcggcaac
gttcccgaagttctggaagtacgcggcgaactgtacatgaccgacgcggatctagcggac
ctcaatgtccgtcaaaccgatgccggtcacgaaccgttcaagaacacccgcaacgtcact
gcgggaacgattcgcttgctcgatcccaaaatcgcagcctcacgcaacatccgattcttc
tgtcatggcagcggcgaattagtcggcgttcgagcatctgaccacatgacgttcctgcaa
catgttcaggcgttaggaatcccgatcgcaccggatgttgttcgctttgaaaacaaagag
gatgcacttcaagcgatcgcgaaactcgaattggagatgcctgatctgccgtttgaaatc
gacggcatcgtgttcaaagtcgactcgttcgagcagcgcgaaaaactgggtgtccgcagc
aagagcccacgctgggtaatagcttacaaattcgaacgctatgaagccatcaccacactt
gaggcgatcgatgtgcaagtcggcaagacgggcacaatcacgccagttgcttacctgacg
ccggtcgacatcgccgacaccaccgtctcgcgagcctccctgcacaacgctgacgagatc
gaacgattggacgttcgcgtcggagataccgtggtcgtcgagaaggccggcaaaatcatt
cccaaggtcgtgcgagtcgagaaacatgctcgcaccaaaccacttcctaagttcgaattc
ccaacccactgcccacagtgcgatgaagtactgactcgtgacgaaggcggcgtttacatc
cgttgcactaacccggcgtgtcccgctcaacttcggcaacgattggtctactttggcagt
cgaaccggcatggacatcgatggcctgggtgaagaagtcgtcgatctgctgctgcaaaaa
gagttggtcgaaaactacgccgacctttaccgattgaatgtggatgaactcgccgaattg
acttggccgcggttgagaaagggcaaaggcgatgagatgatcgaggtgcagttcggccgt
aagaacgccgagagccttgtcgccggcatcaacgaaagccgcacccgcgggttggctcgc
gtgctgtcatcgatcagcatccgtcacatcggaccacgagtcgccaagcttatcacggcg
aagttttggaatcttgatctactgcgttcggcaaaggcagaagacctggcggcgatccat
gagatcggcgatcgaatcgctgaaagcttggtcaaatttatccacagcgaatcgggctca
caaacgctcagtgatttggatgccgtgggcgtcacaatgtccgaaacggaaccggtcgca
acacctgacgaagaagcaaacctgccactggcgggcaagaacatcgtcgcgacgggaacg
ttgcagcactacactcgcgatgagatcaaagcccgcatcgaggaactcggtgggcgtgct
gcgagcagcgtgagcaagaaaaccgatttcctgatcgcgggcgagaaggcgggcagcaaa
ctcacgaaagccgaatcacttggggtcgaagtcctcagcgaagatgactttcggttgcgg
tacgaaaccgaggcgacttga
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integrated database retrieval system
