Rhodopirellula baltica: RB9078
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Entry
RB9078 CDS
T00134
Symbol
kdgA
Name
(GenBank) alpha-ketoglutarate dehydrogenase E1
KO
K00164
2-oxoglutarate dehydrogenase E1 component [EC:
1.2.4.2
]
Organism
rba
Rhodopirellula baltica
Pathway
rba00020
Citrate cycle (TCA cycle)
rba00785
Lipoic acid metabolism
rba01100
Metabolic pathways
rba01110
Biosynthesis of secondary metabolites
rba01120
Microbial metabolism in diverse environments
rba01200
Carbon metabolism
rba01210
2-Oxocarboxylic acid metabolism
Module
rba_M00009
Citrate cycle (TCA cycle, Krebs cycle)
rba_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RB9078 (kdgA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
RB9078 (kdgA)
Enzymes [BR:
rba01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.2 oxoglutarate dehydrogenase (succinyl-transferring)
RB9078 (kdgA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
E1_dh
Transket_pyr
OxoGdeHyase_C
2-oxogl_dehyd_N
DUF659
Motif
Other DBs
NCBI-ProteinID:
CAD76071
UniProt:
Q7UM46
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All DBs
Position
4846881..4849790
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AA seq
969 aa
AA seq
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MRSAWRRRFVAGLMNSYSLDYIDDLYVQYVRDPSSVSETWRQYFEQFLVGAGARTNAAPA
ASQTASQGDASANGKTSGARSVVAPAFASGQPGSAEDTSERPGSTGDQNVDQALWLARIQ
DRVDQLVREYRVRGHLVATLDPLGLFEHTCPELSPRSHGLSKQDLARPFDSSILENVSGS
TLDVILNKLQSTYCRSIGAQFMHIDNRNIRDWLQRRMETTENRLDLSHEVQRRIYTRLAD
ATIFEEFVRRKFVGAKTFSLEGAESLIPLIDLALEKAGQHQVKEVVMAMAHRGRLNVMAN
ILKKRAMNIFWSFDDPTPELSRGGGDVRYHLGYSSDWKTASGDRLHISLCFNPSHLEYVN
TVALGRTRCKQDNRGDVDRQDVMTILIHGDAAFAGEGVVQETLNLSELKGYRTGGTLHVV
INNQVGFTTEPDEGRSTTYATDIAKMLQIPIFHVNGEDPEAVAQVVSLAMDFRKEFHRDV
VIDLYAYRRWGHNEGDEPRFTQPQMYAEIDRRPGVRQQYLNRLLKLGKITEAEADEISRD
RTEKLESEFEASKHESFVPDTQTLAANWMEYFGGPEPADEVDTTIPATRLSELIDSLTRL
PEGFSPHKKLKRPMQQRREMASGERPLDWATAEAAAFASLLDAGHPIRLTGQDCERGTFS
HRHAVLHDMRDGNEYCPLKNLHENQARLELYNSPLSEAGVLGFEYGYSLDCPSGLCMWEA
QFGDFWNAAQVIVDQFIASAEDKWNRLSGLVMLLPHGFEGQGPEHCSARVERFLAMAAED
NIQICQPTTPAQYFHLLRRQVIRKWRKPLIVLTPKSLLRHAEVTSPLDVVAEGSFRKILP
DRKVPLEGAKRLVLCTGKVYYDLLQERTDRNIEDVPIMRLEQLYPLSPDEIFAAFEGLAE
GSEIRWVQEEPENMGAWPYLKLKIGDELNKRFRFTKATRAESASPSTGSMAAHKLEQIDL
LKAAFEGIN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
ttgcgatccgcttggcgacggcggttcgttgcgggactcatgaatagctattcgttggac
tacatcgacgatttgtacgtgcaatatgtacgtgatccgtcgagcgtttcggaaacctgg
cgtcaatacttcgagcagttcctggtcggggctggtgcgcggaccaacgctgcacctgcc
gccagccaaacggcttcgcaaggtgatgcatccgccaatgggaaaacctcgggcgcacgc
tccgtcgttgcgcccgcgtttgcatccggccaacccggcagcgccgaagacacgtcggag
cgtcctggctccaccggcgatcaaaatgtcgaccaagccctgtggctggctcgcatccaa
gatcgcgtggaccaattggttcgggaatatcgcgtccgcggtcacttggtcgccaccctg
gacccattggggttgttcgaacacacctgcccggaactgtcgccgcgaagccatggactg
agcaagcaagacctggcccgtccttttgatagcagcattctcgaaaacgtttcgggcagc
acgcttgacgtcattctgaacaaactgcaatccacttactgtcgcagtatcggtgcgcag
ttcatgcacatcgacaatcgcaacattcgcgattggctgcagcgtcggatggaaacgacg
gaaaaccggttggacctgtcgcacgaagtccaacggcggatttacacgcgactggccgac
gcgacgatcttcgaagaatttgttcgccggaaattcgtcggtgcaaagacattctcgctg
gaaggtgccgaaagcctgattcctctgattgacctggcgcttgaaaaagcgggccagcat
caagtcaaagaggttgtcatggcaatggcacaccgtggacgcctcaacgtgatggcgaac
atcctcaagaagcgggcgatgaatatcttttggtcgttcgatgacccaactcctgaactc
agccgcggtggtggcgatgtacgttatcacctgggatacagcagcgattggaaaaccgcg
tccggtgaccgattgcatatctcgctgtgcttcaaccccagccaccttgagtacgtcaac
acggtcgctctaggacgcacacgctgcaaacaagacaaccgtggcgacgtggatcgccaa
gatgtgatgacgattttgattcacggcgacgccgcttttgctggtgaaggcgtggttcaa
gaaacactcaacctcagcgaactgaaaggttaccgcaccggcggcaccctgcacgtcgtg
atcaacaaccaagtcggattcaccaccgaaccggacgaaggccgtagcacgacgtacgcg
accgacatcgcgaaaatgctgcaaatcccgattttccacgtcaacggcgaagaccccgaa
gcggtcgctcaggtcgtctcgttggcgatggatttccgtaaagaattccaccgtgacgtt
gttatcgatttgtacgcctatcgccgttggggacataacgaaggtgacgaacctcgtttc
acccaacctcagatgtacgctgaaatcgatcgtcgtccaggtgtgcgacaacagtatctc
aatcgcctgctaaaactcgggaaaatcaccgaggcagaagccgacgagatcagtcgtgac
cggactgaaaagctcgagagcgaattcgaagcgagcaagcacgagtcgtttgttcccgac
acgcaaacgctcgccgcgaactggatggagtactttggcgggcctgaacctgccgatgaa
gtcgacacgaccattccggccacgcgactgagcgagttgattgactcactgacccgtctg
cccgaaggattctcgccgcacaaaaagctcaaacgaccgatgcaacagcgtcgtgaaatg
gccagcggcgaacgtccattggactgggccaccgcggaagccgccgcatttgcatcgttg
ctcgacgcgggtcacccgatccgattgacgggccaagattgcgagcgtggtacgttcagc
caccgccatgccgtgttgcacgacatgcgcgacggcaacgaatactgcccgctgaaaaac
ctccacgaaaaccaagctcggctagaactctacaacagccccctgagcgaggccggagtg
ctcgggtttgagtatggctactcgctggactgccccagtggcctgtgcatgtgggaagct
cagtttggtgacttctggaacgccgctcaggtgatcgtggaccagttcatcgccagtgcc
gaagacaagtggaatcgcttatccggcttggtcatgcttctgccacacggattcgaaggc
caaggccccgaacactgcagcgctcgagtcgaacgcttcctggcaatggcggccgaagac
aacatccaaatctgccagccgactacaccagcccaatacttccacctgcttcgccgacag
gtcattcgcaaatggcgtaagcctctgatcgtgctgacacccaaaagtctgctacgacac
gcggaagtcaccagcccactggatgtcgtcgcagaaggcagtttccgaaagattttgccc
gatcgcaaagtcccacttgaaggcgctaagcgattggttctgtgtaccgggaaagtttat
tacgacctgctgcaagaacgcaccgatcgaaatatcgaagacgttccgatcatgcgtttg
gaacaactctacccgctgtcgcccgatgaaatcttcgccgcctttgagggtctcgccgaa
ggatccgaaatccgttgggtccaagaagagcccgaaaacatgggcgcgtggccgtacttg
aaactcaagatcggcgacgaactcaataagcgcttccggttcaccaaagcaactcgtgcg
gaatcggccagccccagcaccggttcaatggcggctcacaaattggaacaaatcgatctg
ctcaaagccgccttcgaaggcattaactga
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